View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0279_low_35 (Length: 216)
Name: NF0279_low_35
Description: NF0279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0279_low_35 |
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| [»] scaffold0054 (2 HSPs) |
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| [»] scaffold0285 (2 HSPs) |
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Alignment Details
Target: scaffold0054 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 3323 - 3510
Alignment:
| Q |
13 |
agaacctgtgataatattttacataattttttataatgaacttgtgacaatagaacaatgaagctatagtacnnnnnnnctttgcataatttacataata |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || || ||| ||||||||||||||||||||| |
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| T |
3323 |
agaacctgtgataatattttacataattttttataatgaacttgtgacaataaaacaatgaaactgtattactttttttctttgcataatttacataata |
3422 |
T |
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| Q |
113 |
tttgatgtaattagatgtgttaggatactttgacagtagaacctgtgataatatatattttattaatttcttttgttcatctcactcg |
200 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||| |
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| T |
3423 |
tttgatgtaattagatgtgttaggatactgtgacagtagaacctgtgataatatatattttgttaatttcttttgttaatttcactcg |
3510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 3298 - 3339
Alignment:
| Q |
125 |
agatgtgttaggatactttgacagtagaacctgtgataatat |
166 |
Q |
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| T |
3298 |
agatgtgttaggctactgtgacagtagaacctgtgataatat |
3339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0285 (Bit Score: 134; Significance: 6e-70; HSPs: 2)
Name: scaffold0285
Description:
Target: scaffold0285; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 8032 - 7846
Alignment:
| Q |
13 |
agaacctgtgataatattttacataattttttataatgaacttgtgacaatagaacaatgaagctatagtacnnnnnnnctttgcataatttacataata |
112 |
Q |
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| T |
8032 |
agaacctgtgataatattttacataattttttataatgaacttgtgacaatagaacaatgaaactgtattacttttcttctttgcataatttacataata |
7933 |
T |
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| Q |
113 |
tttgatgtaattagatgtgttaggatactttgacagtagaacctgtgataatatatattttattaatttcttttgttcatctcactc |
199 |
Q |
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| T |
7932 |
tttgatgtaattagatgtgttaggatactgtgacagtagaacctgtgataatgtatattttgttaatttcttttgttaatttcactc |
7846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0285; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 8057 - 8016
Alignment:
| Q |
125 |
agatgtgttaggatactttgacagtagaacctgtgataatat |
166 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||| |
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| T |
8057 |
agatgtgttaggctactgtgacagtagaacctgtgataatat |
8016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 6e-70; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 16764186 - 16764000
Alignment:
| Q |
13 |
agaacctgtgataatattttacataattttttataatgaacttgtgacaatagaacaatgaagctatagtacnnnnnnnctttgcataatttacataata |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || || ||| ||||||||||||||||||||| |
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| T |
16764186 |
agaacctgtgataatattttacataattttttataatgaacttgtgacaataaaacaatgaaactgtattactttttttctttgcataatttacataata |
16764087 |
T |
|
| Q |
113 |
tttgatgtaattagatgtgttaggatactttgacagtagaacctgtgataatatatattttattaatttcttttgttcatctcactc |
199 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| || |||||| |
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| T |
16764086 |
tttgatgtaattagatgtgttaggatactgtgacagtagaacctgtgataatatatattttgttaatttcttttgttaatttcactc |
16764000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 10801276 - 10801107
Alignment:
| Q |
13 |
agaacctgtgataatattttacataattttttataatgaacttgtgacaatagaacaatgaagctatagtacnnnnnnnctttgcataatttacataata |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||| ||||||||||||||||||||| |
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| T |
10801276 |
agaacctgtgataatattttacataattttttataatgaacctgtgacaatagaacaatgaaactgtagtactttttttctttgcataatttacataata |
10801177 |
T |
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| Q |
113 |
tttgatgtaattagatgtgttaggatactttgacagtagaacctgtgataatatatattttattaatttc |
182 |
Q |
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| T |
10801176 |
tttgatgtaattagatgtgttaggatactctgacagtagaacctgtgataatatatattttgttaatttc |
10801107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 10801301 - 10801260
Alignment:
| Q |
125 |
agatgtgttaggatactttgacagtagaacctgtgataatat |
166 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||| |
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| T |
10801301 |
agatgtgttaggctactgtgacagtagaacctgtgataatat |
10801260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 16764211 - 16764170
Alignment:
| Q |
125 |
agatgtgttaggatactttgacagtagaacctgtgataatat |
166 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||| |
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| T |
16764211 |
agatgtgttaggctactgtgacagtagaacctgtgataatat |
16764170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 168
Target Start/End: Complemental strand, 25223257 - 25223191
Alignment:
| Q |
102 |
tttacataatatttgatgtaattagatgtgttaggatactttgacagtagaacctgtgataatatat |
168 |
Q |
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| T |
25223257 |
tttacctaatttttgatgtaattagatgtgttaggctattgtcacagtatatcctgtgataatatat |
25223191 |
T |
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