View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0279_low_5 (Length: 480)
Name: NF0279_low_5
Description: NF0279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0279_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 13 - 389
Target Start/End: Original strand, 21596822 - 21597198
Alignment:
| Q |
13 |
aatataagaaccaacaacaacaaacaaacacgaaagaaccttccataaatcactcttatccgttgattccctcgcataatatctcctcacaagcaacgca |
112 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
21596822 |
aatacaagaaccaacaacaacaaacaaacacgaaagaaccttccataaatcgctcttatcagttgattccctcgcataatatctcctcacaagcaaagca |
21596921 |
T |
|
| Q |
113 |
atagccataagcataaagatgaacagagtacttacagaaaaaacactagacagaacatccaaactagtaaaaagagcaacaacacaacttgacaaagttg |
212 |
Q |
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|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21596922 |
atcgccataagcataaaaatgaacagagtacttacagaaaaaacactagacagaacatccaaactagtaaaaagagcaacaacacaacttgacaaagttg |
21597021 |
T |
|
| Q |
213 |
tcaaaagtgtagcattaataggtgttccagttttaggatgaataagtgcaaaaaagggtggaatcatatgtgaccttgcaatttgagtagtatacctagc |
312 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
21597022 |
tcaaaagtgtagcattaataggtgttccagtttttggatgaataagtgcaaaaaagggtggaatcatttgtgaccttgcaatttgagtagtgtacctagc |
21597121 |
T |
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| Q |
313 |
ttgtcccattgacccaacaagcaaacttgttgtcattcctttcaaagcacaaatactcactaaatatttaccccatt |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21597122 |
ttgtcccattgacccaacaagcaaacttgttgtcattcctttcaaagcacaaatactcactaaatatttaccccatt |
21597198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 20 - 389
Target Start/End: Original strand, 11986993 - 11987362
Alignment:
| Q |
20 |
gaaccaacaacaacaaacaaacacgaaagaaccttccataaatcactcttatccgttgattccctcgcataatatctcctcacaagcaacgcaatagcca |
119 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11986993 |
gaaccaacaacaacaaacaaacacaaaagaaccttccataaatcactcttatccgttgcttccctcgcataatatctcctcacaagcaacgcaatagcca |
11987092 |
T |
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| Q |
120 |
taagcataaagatgaacagagtacttacagaaaaaacactagacagaacatccaaactagtaaaaagagcaacaacacaacttgacaaagttgtcaaaag |
219 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11987093 |
taagcataaaaatgaaaagagtacttacagaaaaaacactagccagaacatccacactagtaaaaagagcaacaacacaacttgacaaagttgtcaaaag |
11987192 |
T |
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| Q |
220 |
tgtagcattaataggtgttccagttttaggatgaataagtgcaaaaaagggtggaatcatatgtgaccttgcaatttgagtagtatacctagcttgtccc |
319 |
Q |
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||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11987193 |
tgtagcattaataggtgttccagttttgggatgaacaagtgcaaaaaagggtggaatcatatgtgaccttgcaatttgagtagtgtacctagcttgtccc |
11987292 |
T |
|
| Q |
320 |
attgacccaacaagcaaacttgttgtcattcctttcaaagcacaaatactcactaaatatttaccccatt |
389 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11987293 |
attgacccaacaagcaaacttgttgtcattcctttcaaagaacaaatactcactaaatatttaccccatt |
11987362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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