View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0279_low_7 (Length: 460)

Name: NF0279_low_7
Description: NF0279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0279_low_7
NF0279_low_7
[»] chr6 (23 HSPs)
chr6 (77-445)||(5253522-5253892)
chr6 (79-445)||(5065387-5065771)
chr6 (125-428)||(5126613-5126934)
chr6 (142-442)||(5346005-5346323)
chr6 (145-428)||(5135923-5136221)
chr6 (142-442)||(5242513-5242831)
chr6 (145-428)||(5100822-5101120)
chr6 (142-267)||(5177908-5178033)
chr6 (142-267)||(5279733-5279858)
chr6 (142-268)||(5688904-5689030)
chr6 (142-268)||(5098379-5098505)
chr6 (142-263)||(5427073-5427194)
chr6 (270-434)||(5438998-5439161)
chr6 (142-271)||(5352864-5352993)
chr6 (273-442)||(5177715-5177886)
chr6 (168-259)||(5124470-5124561)
chr6 (142-268)||(5180775-5180901)
chr6 (142-268)||(5398214-5398340)
chr6 (273-442)||(5279540-5279711)
chr6 (273-442)||(5689051-5689222)
chr6 (276-434)||(5448596-5448753)
chr6 (334-434)||(5156224-5156321)
chr6 (204-268)||(5372265-5372329)
[»] chr2 (2 HSPs)
chr2 (270-437)||(22583432-22583601)
chr2 (172-231)||(22583333-22583392)
[»] chr7 (1 HSPs)
chr7 (142-268)||(36212922-36213048)
[»] chr3 (8 HSPs)
chr3 (142-271)||(47985394-47985523)
chr3 (142-271)||(48003968-48004097)
chr3 (142-271)||(47994681-47994810)
chr3 (142-271)||(48013253-48013382)
chr3 (318-434)||(47985588-47985701)
chr3 (318-434)||(47994875-47994988)
chr3 (318-434)||(48004162-48004275)
chr3 (318-434)||(48013447-48013560)
[»] chr4 (6 HSPs)
chr4 (144-254)||(4337084-4337194)
chr4 (124-267)||(4132601-4132741)
chr4 (142-267)||(4319303-4319428)
chr4 (186-266)||(25569010-25569090)
chr4 (142-212)||(4122645-4122715)
chr4 (368-439)||(4319544-4319615)
[»] scaffold1476 (1 HSPs)
scaffold1476 (172-231)||(47-106)


Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 77 - 445
Target Start/End: Complemental strand, 5253892 - 5253522
Alignment:
Q  77 cactactaacaataacattcgtatcttgtccatgacactcctccgccttttcagcaatgggctcgtcatatatgagataaactgtcgtcctcttcacaat 176  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5253892 cactactaacaataacattcatatcttgtccatgacactcctccgccttttcagcaatgggctcgtcatatatgagataaactgtcgtcctcttcacaat 5253793  T
Q  177 gaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactctctgcccctcctcgtcttcaaaggagattagagct 276  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5253792 gaaactgttctcaaaaacaacaacaaactccactttatttccaggttcaatacttaataatactctttgcccctcctcgtcttcaaaggagattagagct 5253693  T
Q  277 gaatggtggcctt--tgtaattttttaccaacaaatttgtgaagccatcagatgttgtgttatctggggttgaagattagacaatgcttatctttattgt 374  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5253692 gaatggtggcctttgtgtaattttttaccaacaaatttgtgaagccatcagatgttgtgttatctggggttgaagattagacaatgcttatctttattgt 5253593  T
Q  375 cttcaacatacgcccttccaattgagggactttaaaagatacagaagaaccttcacaattgaaagttacag 445  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5253592 cttcaacatacgcccttccaattgagggactttaaaaggtacagaagaaccttcacaattgaaagttacag 5253522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 79 - 445
Target Start/End: Original strand, 5065387 - 5065771
Alignment:
Q  79 ctactaacaataacattcgtatcttgtccatgacactcctccgccttttcagcaatgggctcgtcatatatgagataaactgtcgtcctcttcacaatga 178  Q
    |||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| || || |||||||||||||||||||| ||||||||||||| ||    
T  5065387 ctactaacaataacattcttatcttgtgcatgacactcctcccccttttcagcaattggttcatcatatatgagataaactgttgtcctcttcacaacga 5065486  T
Q  179 aactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactctctgcccctcctcgtcttcaaaggagat--------- 269  Q
    ||| ||||||||||||| ||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||             
T  5065487 aaccgttctcaaaaacaacaacaaaatccactttatttccaggttcaatacttgatactactctctgcccctcctcatcttcaaaggagattaacgcctc 5065586  T
Q  270 -------tagagctgaatggtggcctt--tgtaattttttaccaacaaatttgtgaagccatcagatgttgtgttatctggggttgaagattagacaatg 360  Q
           ||||||||||||||||  ||  ||||||||||||||||||||||||||| ||||||||||| | ||||||| ||||||||||| |||||||||    
T  5065587 tctcttatagagctgaatggtggattttgtgtaattttttaccaacaaatttgtgaggccatcagatgctatgttatccggggttgaagaatagacaatg 5065686  T
Q  361 cttatctttattgtcttcaacatacgcccttccaattgagggactttaaaagatacagaagaaccttcacaattgaaagttacag 445  Q
    | |||| |||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||| |||||| |||||||||    
T  5065687 catatcattattgtcttcaacatacgccctttcatttgagggacttcaaaagttacagaagaaccttcgcaattgtaagttacag 5065771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 125 - 428
Target Start/End: Original strand, 5126613 - 5126934
Alignment:
Q  125 tttcagcaatgggctcgtcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttc 224  Q
    ||||| |||| || || ||||||||||||||||| |  ||| ||||||||||||||| ||||| ||||||| |||||| ||| ||||| || |||| |||    
T  5126613 tttcaccaattggttcatcatatatgagataaacagctgtcttcttcacaatgaaaccgttcttaaaaacaacaacaatctcaactttgttaccagcttc 5126712  T
Q  225 aatacttaataatactctctgcccctcctcgtcttcaaaggaga----------------ttagagctgaatggtggcctt--tgtaattttttaccaac 306  Q
     |||||| ||| |||||||| ||||||||| |||||||||||||                 ||||| ||||||||||||||  |||||||||| ||||||    
T  5126713 tatacttgatactactctctccccctcctcatcttcaaaggagactgctgcctctctcttatagagttgaatggtggccttcgtgtaatttttcaccaac 5126812  T
Q  307 aaatttgtgaagccatcagatgttgtgttatctggggttgaagattagacaatgcttatctttattgtcttcaacatacgcccttccaattgagggactt 406  Q
    ||  |||| | |||||| |||||| |||||||   ||||||||| |||||||||| |||| ||| | |||||||| ||||||||| || |||||| ||||    
T  5126813 aagcttgtaaggccatctgatgttatgttatccaaggttgaagaatagacaatgcatatcattactttcttcaacgtacgccctttcacttgaggtactt 5126912  T
Q  407 taaaagatacagaagaaccttc 428  Q
     ||||| ||| |||||||||||    
T  5126913 caaaagttaccgaagaaccttc 5126934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 142 - 442
Target Start/End: Complemental strand, 5346323 - 5346005
Alignment:
Q  142 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 241  Q
    |||||||||||||||| ||  ||| |||||||||||||||  ||||||| |||| | |||| ||||||||| || |||||||| |||||| |||  ||||    
T  5346323 tcatatatgagataaattgctgtcttcttcacaatgaaaccattctcaataacaacgacaacctccactttgttaccaggttctatacttgatacaactc 5346224  T
Q  242 tctgcccctcctcgtcttcaaaggagattag----------------agctgaatggtggcctttgt--aattttttaccaacaaatttgtgaagccatc 323  Q
    |||| |||||||| |||||||||| |  ||                 ||||||||||| ||||||||  ||||||| |||||||| ||| | | ||||||    
T  5346223 tctggccctcctcatcttcaaaggcggctactgcctctctcttgtatagctgaatggtagcctttgtgtaatttttcaccaacaagtttctcaggccatc 5346124  T
Q  324 agatgttgtgttatctggggttgaagattagacaatgcttatctttattgtcttcaacatacgcccttccaattgagggactttaaaagatacagaagaa 423  Q
    ||||||| | ||||| |  |||||||| |||||||  | |||| |||||||||||||||| |||||||||| |||||| |||| |||||  |||||||||    
T  5346123 agatgttatattatccgaagttgaagaatagacaacacatatcgttattgtcttcaacattcgcccttccacttgaggaacttcaaaagtaacagaagaa 5346024  T
Q  424 ccttcacaattgaaagtta 442  Q
    |||||| ||||||||||||    
T  5346023 ccttcagaattgaaagtta 5346005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 145 - 428
Target Start/End: Original strand, 5135923 - 5136221
Alignment:
Q  145 tatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactctct 244  Q
    |||| |||||||||||  ||| | ||||||||||||||||||||||||||| |||| | ||||||||| || || ||||| |||||| ||| ||| |||     
T  5135923 tatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgatactaccctca 5136022  T
Q  245 gcccctcctcgtcttcaaaggag----at------------tagagctgaatggtggcctttgt--aattttttaccaacaaatttgtgaagccatcaga 326  Q
    |  ||||||| ||||||||||||    ||            |||||||||||||||||||||||  ||||||||||||||| |||| | | ||||   ||    
T  5136023 gagcctcctcatcttcaaaggaggctaatgcttcgctcttgtagagctgaatggtggcctttgtgtaattttttaccaacacatttttaaggccacttga 5136122  T
Q  327 tgttgtgttatctggggttgaagattagacaatgcttatctttattgtcttcaacatacgcccttccaattgagggactttaaaagatacagaagaacct 426  Q
    |||| ||||||||||||||||||  ||||||||||  |||   |||||||||||  |||||||||||| |||||||||||  |||| |||||||||||||    
T  5136123 tgttatgttatctggggttgaagtatagacaatgcacatc---attgtcttcaagttacgcccttccacttgagggacttctaaagttacagaagaacct 5136219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 142 - 442
Target Start/End: Original strand, 5242513 - 5242831
Alignment:
Q  142 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 241  Q
    ||||||| ||||||||||   ||| |||||||||||||||||||||||||||||  ||| | ||||||||| || |||||||| |||||| ||| |||||    
T  5242513 tcatatacgagataaactactgtcttcttcacaatgaaactgttctcaaaaacaaaaacgacctccactttgttaccaggttctatacttcatactactc 5242612  T
Q  242 tctgcccctcctcgtcttcaaaggag----------------attagagctgaatggtggcctt--tgtaattttttaccaacaaatttgtgaagccatc 323  Q
    || |||||| ||| |||||||||| |                  ||||||||||||||||||||  |||||||||| || ||||| |||   | ||||||    
T  5242613 tcagccccttctcatcttcaaaggcggctactgcctctctcttgtagagctgaatggtggcctttgtgtaatttttcactaacaagtttccaaggccatc 5242712  T
Q  324 agatgttgtgttatctggggttgaagattagacaatgcttatctttattgtcttcaacatacgcccttccaattgagggactttaaaagatacagaagaa 423  Q
    ||||||| |  |||| |  |||||||| ||||||   | |||| |||||||||||||||| |||||||||| ||||||||||| |||||  |||||||||    
T  5242713 agatgttatactatccgaagttgaagaatagacagcacatatcgttattgtcttcaacattcgcccttccacttgagggacttcaaaagtaacagaagaa 5242812  T
Q  424 ccttcacaattgaaagtta 442  Q
    |||||| ||| ||| ||||    
T  5242813 ccttcagaatcgaaggtta 5242831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 145 - 428
Target Start/End: Original strand, 5100822 - 5101120
Alignment:
Q  145 tatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactctct 244  Q
    |||| |||||||||||  ||| | ||||||||||||||||||||||||||| |||| | ||||||||| || || ||||| |||||| ||| ||| |||     
T  5100822 tatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgatactaccctca 5100921  T
Q  245 gcccctcctcgtcttcaaaggagatta----------------gagctgaatggtggcctttgt--aattttttaccaacaaatttgtgaagccatcaga 326  Q
    |  ||||||| ||||||||||||| ||                |||||||||||||||||||||  ||||||| || |||| |||| | | ||||   ||    
T  5100922 gagcctcctcatcttcaaaggagactaatgcctcgctcttatagagctgaatggtggcctttgtgtaatttttcactaacacatttttaaggccacttga 5101021  T
Q  327 tgttgtgttatctggggttgaagattagacaatgcttatctttattgtcttcaacatacgcccttccaattgagggactttaaaagatacagaagaacct 426  Q
    |||| ||||||||||||||||||  ||||||||||  |||   |||||||||||  |||||||||||| |||||||||||  |||| |||||||||||||    
T  5101022 tgttatgttatctggggttgaagtatagacaatgcacatc---attgtcttcaagttacgcccttccacttgagggacttctaaagttacagaagaacct 5101118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 142 - 267
Target Start/End: Complemental strand, 5178033 - 5177908
Alignment:
Q  142 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 241  Q
    ||||||| |||||||||||| ||  ||||||||||||||| ||||||||||||| |||||| ||||||||| || | |||||| |||||| ||| |||||    
T  5178033 tcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactactc 5177934  T
Q  242 tctgcccctcctcgtcttcaaaggag 267  Q
    |||| ||||| || ||||||||||||    
T  5177933 tctgaccctcttcatcttcaaaggag 5177908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 142 - 267
Target Start/End: Complemental strand, 5279858 - 5279733
Alignment:
Q  142 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 241  Q
    ||||||| |||||||||||| ||  ||||||||||||||| ||||||||||||| |||||| ||||||||| || | |||||| |||||| ||| |||||    
T  5279858 tcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactactc 5279759  T
Q  242 tctgcccctcctcgtcttcaaaggag 267  Q
    |||| ||||| || ||||||||||||    
T  5279758 tctgaccctcttcatcttcaaaggag 5279733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 142 - 268
Target Start/End: Original strand, 5688904 - 5689030
Alignment:
Q  142 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 241  Q
    ||||||| |||||||||||| ||  ||||||||||||||| |||||||||||||  ||||| ||||||||| || | |||||| |||||| ||| |||||    
T  5688904 tcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactactc 5689003  T
Q  242 tctgcccctcctcgtcttcaaaggaga 268  Q
    |||| ||||| || |||||||||||||    
T  5689004 tctgtccctcttcatcttcaaaggaga 5689030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 142 - 268
Target Start/End: Complemental strand, 5098505 - 5098379
Alignment:
Q  142 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 241  Q
    |||||||  ||||||||||  ||| | |||||||||||||||||||| |||||| |||  | ||||||||| || |||||||| |||||| ||| ||| |    
T  5098505 tcatataccagataaactgctgtctttttcacaatgaaactgttctcgaaaacaacaatgacctccactttgttaccaggttctatacttgatattaccc 5098406  T
Q  242 tctgcccctcctcgtcttcaaaggaga 268  Q
    |||| | |||||| |||||||||||||    
T  5098405 tctggctctcctcatcttcaaaggaga 5098379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 142 - 263
Target Start/End: Complemental strand, 5427194 - 5427073
Alignment:
Q  142 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 241  Q
    ||||||| ||||||||||   ||| || |||||| |||||||||||||||||||  ||| | ||||| ||| || |||||||| |||||| ||| |||||    
T  5427194 tcatatacgagataaactactgtcttcgtcacaacgaaactgttctcaaaaacaaaaacgacctccattttgttaccaggttctatacttgatactactc 5427095  T
Q  242 tctgcccctcctcgtcttcaaa 263  Q
    | | ||||||||| ||||||||    
T  5427094 tttccccctcctcatcttcaaa 5427073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 434
Target Start/End: Complemental strand, 5439161 - 5438998
Alignment:
Q  270 tagagctgaatggtggcctttgta--attttttaccaacaaatttgtgaagccatcagatgttgtgttatctggggttgaagattagacaatgcttatct 367  Q
    |||||||||||||||||||||||   |||| | ||||| | |||| | | || ||| |||||| ||||||| || |||||||| ||||||||||  |||     
T  5439161 tagagctgaatggtggcctttgtgtgatttatcaccaatacatttataaggctatctgatgttatgttatccggagttgaagaatagacaatgcacatc- 5439063  T
Q  368 ttattgtcttcaacatacgcccttccaattgagggactttaaaagatacagaagaaccttcacaatt 434  Q
      | || | ||||  |||||||||||| ||||||||||| ||||| |||||||||||||||| ||||    
T  5439062 --aatgacatcaaattacgcccttccacttgagggacttgaaaagttacagaagaaccttcagaatt 5438998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 271
Target Start/End: Original strand, 5352864 - 5352993
Alignment:
Q  142 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 241  Q
    |||||||  ||||||| ||| ||| ||||||| |||||||  ||||| ||||||  ||| | ||| ||||| |  ||||| || |||||| ||| |||||    
T  5352864 tcatataccagataaattgttgtcttcttcacgatgaaacaattctcgaaaacaataaccacctctactttgtcaccaggatccatacttgatactactc 5352963  T
Q  242 tctgcccctcctcgtcttcaaaggagatta 271  Q
    ||||||||||||| ||||||||||| ||||    
T  5352964 tctgcccctcctcatcttcaaaggaaatta 5352993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 442
Target Start/End: Complemental strand, 5177886 - 5177715
Alignment:
Q  273 agctgaatggtggcctttgt--aattttttaccaacaaatttgtgaagccatcagatgttgtgttatctggggttgaagattagacaatgcttatcttta 370  Q
    |||||||||||||| |||||  |||| || |||||||| ||||  | |||||  |||||| | |||||  |||||||||| ||| |||||| |||| | |    
T  5177886 agctgaatggtggcttttgtgtaattcttaaccaacaagtttgcaaggccatttgatgttatattatccagggttgaagaatagtcaatgcatatcatca 5177787  T
Q  371 ttgtcttcaacatacgcccttccaattgagggactttaaaagatacagaagaaccttcacaattgaaagtta 442  Q
    ||||||| ||  | | |||||||| ||||||||||| |||   ||| ||||||||||| |||||||| ||||    
T  5177786 ttgtctttaaagtgcacccttccacttgagggacttcaaacattaccgaagaaccttcgcaattgaaggtta 5177715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 5124470 - 5124561
Alignment:
Q  168 cttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactctctgcccctcctcgtctt 259  Q
    |||||||||||| | ||||| |||||||  |||||| ||||||||||| |||||||| |||||  ||| || ||| ||||||||||| ||||    
T  5124470 cttcacaatgaagcggttcttaaaaacaaaaacaaattccactttattaccaggttctatactcgatactaatctatgcccctcctcctctt 5124561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 268
Target Start/End: Original strand, 5180775 - 5180901
Alignment:
Q  142 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 241  Q
    |||||||  ||||||| ||  ||| |||||||||||||||| ||||||||||||  ||| | ||||||||| || || ||||| || ||| ||| ||| |    
T  5180775 tcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactaccc 5180874  T
Q  242 tctgcccctcctcgtcttcaaaggaga 268  Q
    |||| ||||| || |||||||| ||||    
T  5180875 tctgaccctcttcatcttcaaaagaga 5180901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 268
Target Start/End: Complemental strand, 5398340 - 5398214
Alignment:
Q  142 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 241  Q
    |||||||  ||||||||||| ||| ||||||||||||||   ||||| ||||||   |||| ||| ||||| || |||||||| |||||| ||| ||| |    
T  5398340 tcatatacaagataaactgttgtcttcttcacaatgaaatcattctcgaaaacaaagacaacctcaactttgttaccaggttctatacttgatactaccc 5398241  T
Q  242 tctgcccctcctcgtcttcaaaggaga 268  Q
    | |||||||| || | |||||||||||    
T  5398240 tttgcccctcttcatgttcaaaggaga 5398214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 442
Target Start/End: Complemental strand, 5279711 - 5279540
Alignment:
Q  273 agctgaatggtggcctttgt--aattttttaccaacaaatttgtgaagccatcagatgttgtgttatctggggttgaagattagacaatgcttatcttta 370  Q
    |||||||||||||| |||||  |||| || |||||||| ||||  | |||||  |||||| | |||||  |||||||||| ||| |||||| |||| | |    
T  5279711 agctgaatggtggcttttgtgtaattcttcaccaacaagtttgcaaggccatttgatgttatattatccagggttgaagaatagtcaatgcatatcatca 5279612  T
Q  371 ttgtcttcaacatacgcccttccaattgagggactttaaaagatacagaagaaccttcacaattgaaagtta 442  Q
     |||||| ||  | | |||||||| ||||||||||| |||   ||| ||||||||||| |||||||| ||||    
T  5279611 atgtctttaaagtgcacccttccacttgagggacttcaaacattaccgaagaaccttcgcaattgaaggtta 5279540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 442
Target Start/End: Original strand, 5689051 - 5689222
Alignment:
Q  273 agctgaatggtggcctttgt--aattttttaccaacaaatttgtgaagccatcagatgttgtgttatctggggttgaagattagacaatgcttatcttta 370  Q
    |||||||||||||| |||||  |||| || |||||||| ||||  | |||||  |||||| |||||||  |||||| ||| ||| | |||| |||| | |    
T  5689051 agctgaatggtggcttttgtgtaattcttcaccaacaagtttgcaaggccatttgatgttatgttatccagggttgtagaatagtcgatgcatatcatca 5689150  T
Q  371 ttgtcttcaacatacgcccttccaattgagggactttaaaagatacagaagaaccttcacaattgaaagtta 442  Q
     |||||| ||  | |||||||||| ||||||||||| |||   ||| ||||||||||| |||||||| ||||    
T  5689151 atgtctttaaagtgcgcccttccacttgagggacttcaaacattaccgaagaaccttcgcaattgaaggtta 5689222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 434
Target Start/End: Complemental strand, 5448753 - 5448596
Alignment:
Q  276 tgaatggtggcctttgt--aattttttaccaacaaatttgtgaagccatcagatgttgtgttatctggggttgaagattagacaatgcttatctttattg 373  Q
    |||||||| ||||||||  ||||||| ||||||| |||| | | ||||  |||||||   ||||||||||||||||  ||||||||||  |||   | ||    
T  5448753 tgaatggtagcctttgtgtaatttttcaccaacacatttttaaggccactagatgttacattatctggggttgaagtatagacaatgcacatc---aatg 5448657  T
Q  374 tcttcaacatacgcccttccaattgagggactttaaaagatacagaagaaccttcacaatt 434  Q
     | ||||   |||| |||||| ||||||||||| ||||| |||||||||||||||| ||||    
T  5448656 acgtcaattgacgctcttccacttgagggacttcaaaagttacagaagaaccttcagaatt 5448596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 434
Target Start/End: Original strand, 5156224 - 5156321
Alignment:
Q  334 ttatctggggttgaagattagacaatgcttatctttattgtcttcaacatacgcccttccaattgagggactttaaaagatacagaagaaccttcacaat 433  Q
    ||||||||||||||||  ||||||||||  |||   |||||||||||  |||||||||||| |||||| |||| |||    ||||||||||||||| |||    
T  5156224 ttatctggggttgaagtatagacaatgcacatc---attgtcttcaagttacgcccttccacttgaggaacttcaaatttcacagaagaaccttcagaat 5156320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 268
Target Start/End: Complemental strand, 5372329 - 5372265
Alignment:
Q  204 ctccactttatttccaggttcaatacttaataatactctctgcccctcctcgtcttcaaaggaga 268  Q
    ||||||||| || |||||||| | |||| ||| ||| ||||||||||| || |||||||||||||    
T  5372329 ctccactttgttaccaggttctagacttgatactaccctctgcccctcttcatcttcaaaggaga 5372265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 270 - 437
Target Start/End: Original strand, 22583432 - 22583601
Alignment:
Q  270 tagagctgaatggtggcctttgta--attttttaccaacaaatttgtgaagccatcagatgttgtgttatctggggttgaagattagacaatgcttatct 367  Q
    |||| |||||||||||||||||||  |||||| ||||||||   |||   |||||| ||| || ||||||| ||||||||||| ||||||||||  |||     
T  22583432 tagaactgaatggtggcctttgtatgatttttcaccaacaaggctgtagggccatcggatcttatgttatccggggttgaagaatagacaatgcagatca 22583531  T
Q  368 ttattgtcttcaacatacgcccttccaattgagggactttaaaagatacagaagaaccttcacaattgaa 437  Q
    |||||| ||||||||||||||||| || |  |||||||||||||| ||||||||||||||  ||||||||    
T  22583532 ttattgacttcaacatacgccctttcactacagggactttaaaagttacagaagaaccttggcaattgaa 22583601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 22583333 - 22583392
Alignment:
Q  172 acaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatactt 231  Q
    ||||||||| |||||||| ||||| || ||| |||||||||||| |||||||| ||||||    
T  22583333 acaatgaaattgttctcataaacaacagcaacctccactttattaccaggttctatactt 22583392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 142 - 268
Target Start/End: Original strand, 36212922 - 36213048
Alignment:
Q  142 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 241  Q
    ||||| ||||||||||  |  ||| |||||||||||||| |||||||||||||| |||||| ||||| |||||  |||||||| |||||| ||| || ||    
T  36212922 tcataaatgagataaatcgctgtcttcttcacaatgaaattgttctcaaaaacaacaacaacctccattttatcaccaggttctatacttgatactaatc 36213021  T
Q  242 tctgcccctcctcgtcttcaaaggaga 268  Q
    ||||||||||||| |||||||| ||||    
T  36213022 tctgcccctcctcatcttcaaatgaga 36213048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 142 - 271
Target Start/End: Original strand, 47985394 - 47985523
Alignment:
Q  142 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 241  Q
    |||||||  ||||||||||   ||||||||||||||||||  |||||||||||| |||| | ||||||||| || || ||||| |||||| ||| |||||    
T  47985394 tcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactactc 47985493  T
Q  242 tctgcccctcctcgtcttcaaaggagatta 271  Q
    ||| ||||||||| ||| ||||||||||||    
T  47985494 tctccccctcctcatctccaaaggagatta 47985523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 142 - 271
Target Start/End: Original strand, 48003968 - 48004097
Alignment:
Q  142 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 241  Q
    |||||||  ||||||||||   ||||||||||||||||||  |||||||||||| |||| | ||||||||| || || ||||| |||||| ||| |||||    
T  48003968 tcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactactc 48004067  T
Q  242 tctgcccctcctcgtcttcaaaggagatta 271  Q
    ||| ||||||||| ||| ||||||||||||    
T  48004068 tctccccctcctcatctccaaaggagatta 48004097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 142 - 271
Target Start/End: Original strand, 47994681 - 47994810
Alignment:
Q  142 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 241  Q
    |||||||  ||||||||||   ||||||||||||||||||  |||||||||||| |||| | ||||||||| || || | ||| |||||| ||| |||||    
T  47994681 tcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactactc 47994780  T
Q  242 tctgcccctcctcgtcttcaaaggagatta 271  Q
    ||| ||||||||| ||| ||||||||||||    
T  47994781 tctccccctcctcatctccaaaggagatta 47994810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 142 - 271
Target Start/End: Original strand, 48013253 - 48013382
Alignment:
Q  142 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 241  Q
    |||||||  ||||||||||   ||||||||||||||||||  |||||||||||| |||| | ||||||||| || || | ||| |||||| ||| |||||    
T  48013253 tcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactactc 48013352  T
Q  242 tctgcccctcctcgtcttcaaaggagatta 271  Q
    ||| ||||||||| ||| ||||||||||||    
T  48013353 tctccccctcctcatctccaaaggagatta 48013382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 434
Target Start/End: Original strand, 47985588 - 47985701
Alignment:
Q  318 gccatcagatgttgtgttatctggggttgaagattagacaatgcttatctttattgtcttcaacatacgcccttccaattgagggactttaaaagataca 417  Q
    |||||| |||||| ||| ||||| ||||||||  ||||||||||  |||   |||||||| ||  || ||| ||||| ||||||||||| ||||| |||     
T  47985588 gccatctgatgttatgtcatctgaggttgaagtatagacaatgcacatc---attgtctttaagttatgcctttccacttgagggacttcaaaagttacc 47985684  T
Q  418 gaagaaccttcacaatt 434  Q
    |||||||||||| ||||    
T  47985685 gaagaaccttcagaatt 47985701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 434
Target Start/End: Original strand, 47994875 - 47994988
Alignment:
Q  318 gccatcagatgttgtgttatctggggttgaagattagacaatgcttatctttattgtcttcaacatacgcccttccaattgagggactttaaaagataca 417  Q
    |||||| |||||| ||| ||||| ||||||||  ||||||||||  |||   |||||||| ||  || ||| ||||| ||||||||||| ||||| |||     
T  47994875 gccatctgatgttatgtcatctgaggttgaagtatagacaatgcacatc---attgtctttaagttatgcctttccacttgagggacttcaaaagttacc 47994971  T
Q  418 gaagaaccttcacaatt 434  Q
    |||||||||||| ||||    
T  47994972 gaagaaccttcagaatt 47994988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 434
Target Start/End: Original strand, 48004162 - 48004275
Alignment:
Q  318 gccatcagatgttgtgttatctggggttgaagattagacaatgcttatctttattgtcttcaacatacgcccttccaattgagggactttaaaagataca 417  Q
    |||||| |||||| ||| ||||| ||||||||  ||||||||||  |||   |||||||| ||  || ||| ||||| ||||||||||| ||||| |||     
T  48004162 gccatctgatgttatgtcatctgaggttgaagtatagacaatgcacatc---attgtctttaagttatgcctttccacttgagggacttcaaaagttacc 48004258  T
Q  418 gaagaaccttcacaatt 434  Q
    |||||||||||| ||||    
T  48004259 gaagaaccttcagaatt 48004275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 434
Target Start/End: Original strand, 48013447 - 48013560
Alignment:
Q  318 gccatcagatgttgtgttatctggggttgaagattagacaatgcttatctttattgtcttcaacatacgcccttccaattgagggactttaaaagataca 417  Q
    |||||| |||||| ||| ||||| ||||||||  ||||||||||  |||   |||||||| ||  || ||| ||||| ||||||||||| ||||| |||     
T  48013447 gccatctgatgttatgtcatctgaggttgaagtatagacaatgcacatc---attgtctttaagttatgcctttccacttgagggacttcaaaagttacc 48013543  T
Q  418 gaagaaccttcacaatt 434  Q
    |||||||||||| ||||    
T  48013544 gaagaaccttcagaatt 48013560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 144 - 254
Target Start/End: Complemental strand, 4337194 - 4337084
Alignment:
Q  144 atatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactctc 243  Q
    |||||||||||||||||| |||||| |||||||  |||||||| |||||||| |||||| ||| |||||||  |||||||| ||| || |||  ||||||    
T  4337194 atatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgataccactctc 4337095  T
Q  244 tgcccctcctc 254  Q
    |||| ||||||    
T  4337094 tgccactcctc 4337084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 124 - 267
Target Start/End: Original strand, 4132601 - 4132741
Alignment:
Q  124 ttttcagcaatgggctcgtcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggtt 223  Q
    |||||| |||| || || |||||||||||||||||||  ||| || ||||||||||||||||| ||||||   |||||| ||| ||||| |  |||||||    
T  4132601 ttttcaccaattggttcatcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaa---caacaatctcgactttgtcaccaggtt 4132697  T
Q  224 caatacttaataatactctctgcccctcctcgtcttcaaaggag 267  Q
    | ||| || ||| ||||||||||| |||||| | ||||||||||    
T  4132698 ccatatttgatactactctctgccactcctcattttcaaaggag 4132741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 142 - 267
Target Start/End: Original strand, 4319303 - 4319428
Alignment:
Q  142 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 241  Q
    |||||||||||||||||||  ||| || ||||||||||||||||| |||||||  |||||| |||||| || |  |||||||| ||| ||  ||  ||||    
T  4319303 tcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaacgacaacaatctccaccttgtcaccaggttccatatttgttacaactc 4319402  T
Q  242 tctgcccctcctcgtcttcaaaggag 267  Q
    |||||| |||||| | ||||||||||    
T  4319403 tctgccactcctcattttcaaaggag 4319428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 25569090 - 25569010
Alignment:
Q  186 ctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactctctgcccctcctcgtcttcaaagga 266  Q
    ||||||||||  ||||| ||||||||| ||||||||||| |||||| ||| |||| | ||||||||||||| |||||||||    
T  25569090 ctcaaaaacaaaaacaacctccactttgtttccaggttctatacttgatactactatatgcccctcctcgttttcaaagga 25569010  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 4122645 - 4122715
Alignment:
Q  142 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccacttt 212  Q
    |||||||||||||||||||  ||| || ||||||||||||||||  |||||||| |||||| |||||||||    
T  4122645 tcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaatctccacttt 4122715  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 368 - 439
Target Start/End: Original strand, 4319544 - 4319615
Alignment:
Q  368 ttattgtcttcaacatacgcccttccaattgagggactttaaaagatacagaagaaccttcacaattgaaag 439  Q
    |||||||||||||  |||| ||||||| ||||||||||| ||||  |||||||||||||||  |||||||||    
T  4319544 ttattgtcttcaagctacgtccttccacttgagggacttcaaaaattacagaagaaccttctgaattgaaag 4319615  T

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Target: scaffold1476 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1476
Description:

Target: scaffold1476; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 106 - 47
Alignment:
Q  172 acaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatactt 231  Q
    ||||||||| |||||||| ||||| || ||| |||||||||||| |||||||| ||||||    
T  106 acaatgaaattgttctcataaacaacagcaacctccactttattaccaggttctatactt 47  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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