View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0280-Insertion-1 (Length: 1052)

Name: NF0280-Insertion-1
Description: NF0280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0280-Insertion-1
NF0280-Insertion-1
[»] chr2 (8 HSPs)
chr2 (144-526)||(35796483-35796859)
chr2 (763-989)||(35796206-35796434)
chr2 (7-144)||(35796889-35797017)
chr2 (420-496)||(36071561-36071637)
chr2 (430-487)||(43559214-43559271)
chr2 (849-913)||(20203731-20203795)
chr2 (839-932)||(27464579-27464672)
chr2 (854-927)||(31995139-31995212)
[»] chr7 (12 HSPs)
chr7 (421-495)||(41826237-41826311)
chr7 (839-939)||(7447914-7448014)
chr7 (839-934)||(20401039-20401134)
chr7 (839-913)||(3942240-3942314)
chr7 (839-933)||(26719859-26719953)
chr7 (839-913)||(35543563-35543637)
chr7 (858-932)||(10096516-10096590)
chr7 (841-939)||(33124733-33124831)
chr7 (839-933)||(33898951-33899045)
chr7 (841-939)||(43052910-43053008)
chr7 (841-934)||(388989-389082)
chr7 (840-913)||(45176309-45176382)
[»] chr4 (15 HSPs)
chr4 (422-496)||(33589090-33589164)
chr4 (426-498)||(33583342-33583414)
chr4 (841-913)||(48731182-48731254)
chr4 (839-913)||(9469836-9469910)
chr4 (839-913)||(36543840-36543914)
chr4 (839-939)||(48339106-48339206)
chr4 (841-939)||(19853011-19853109)
chr4 (841-933)||(12673037-12673129)
chr4 (839-939)||(27891420-27891519)
chr4 (839-939)||(36156301-36156401)
chr4 (839-934)||(15697090-15697185)
chr4 (854-933)||(34980526-34980605)
chr4 (850-909)||(39736746-39736805)
chr4 (839-933)||(24007910-24008004)
chr4 (839-932)||(49083241-49083334)
[»] chr1 (13 HSPs)
chr1 (421-495)||(26918762-26918836)
chr1 (420-487)||(36003019-36003086)
chr1 (430-487)||(33351060-33351117)
chr1 (841-911)||(20347727-20347797)
chr1 (841-933)||(40159639-40159731)
chr1 (842-933)||(5204479-5204570)
chr1 (841-939)||(35810751-35810849)
chr1 (841-934)||(42937112-42937205)
chr1 (841-933)||(28006389-28006481)
chr1 (854-913)||(11991331-11991390)
chr1 (839-930)||(31816610-31816701)
chr1 (841-932)||(44596557-44596648)
chr1 (839-933)||(15257178-15257272)
[»] chr8 (4 HSPs)
chr8 (420-487)||(4271483-4271550)
chr8 (841-934)||(43384832-43384925)
chr8 (841-932)||(39478090-39478181)
chr8 (842-939)||(27189092-27189189)
[»] chr3 (14 HSPs)
chr3 (421-487)||(49918005-49918071)
chr3 (839-939)||(33438738-33438838)
chr3 (839-939)||(46293220-46293320)
chr3 (841-913)||(19560783-19560855)
chr3 (839-933)||(30662138-30662232)
chr3 (849-939)||(39135387-39135477)
chr3 (841-934)||(25253740-25253833)
chr3 (854-939)||(39469553-39469638)
chr3 (841-933)||(12710741-12710833)
chr3 (841-933)||(26049549-26049641)
chr3 (839-939)||(52199462-52199562)
chr3 (838-913)||(47782127-47782202)
chr3 (841-939)||(9505130-9505228)
chr3 (841-939)||(54393452-54393550)
[»] chr5 (10 HSPs)
chr5 (839-930)||(31620910-31621001)
chr5 (841-939)||(3801373-3801471)
chr5 (841-934)||(15933201-15933294)
chr5 (841-933)||(34857386-34857478)
chr5 (839-933)||(27196116-27196210)
chr5 (841-913)||(38522870-38522942)
chr5 (839-920)||(43386768-43386851)
chr5 (839-934)||(31021901-31021996)
chr5 (839-913)||(27876102-27876176)
chr5 (839-933)||(32945028-32945122)
[»] chr6 (3 HSPs)
chr6 (421-482)||(6282883-6282944)
chr6 (841-939)||(10961805-10961903)
chr6 (851-913)||(8596855-8596917)
[»] scaffold0022 (1 HSPs)
scaffold0022 (841-934)||(124490-124583)
[»] scaffold0260 (1 HSPs)
scaffold0260 (841-911)||(10050-10120)
[»] scaffold0204 (1 HSPs)
scaffold0204 (839-939)||(26628-26728)
[»] scaffold0223 (1 HSPs)
scaffold0223 (839-933)||(14465-14559)
[»] scaffold0171 (1 HSPs)
scaffold0171 (839-913)||(21146-21220)


Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 144 - 526
Target Start/End: Complemental strand, 35796859 - 35796483
Alignment:
Q  144 caagtgcttaggaatccagattgcggcttacaaccatccatccataatcactatactatgagttctatcttcannnnnnnnnn-gttagtta--aagtgt 240  Q
    ||||||||||||||||||||||| | |||||| ||||||||    ||||||||||||||||||||||||||||           ||||||||  ||||||    
T  35796859 caagtgcttaggaatccagattgtgccttacagccatccat----aatcactatactatgagttctatcttcataaatttttttgttagttaggaagtgt 35796764  T
Q  241 ggtgaataagcatagttcgttctattagccagaagcttatgcagttgtatataaacatttgttgcattgattatgtaaatatagttgtgatggttgtttc 340  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  35796763 ggtgaataagcatagttcgttatattagccagaagcttatgcagttgtatataaacatttgttgcattgattatgtaaatatagttgcgatggtagtttc 35796664  T
Q  341 cttggttgattaaagaaaacaaaaaacgtgtgcactgctac-atttaacattacaattaaataaaaaagtcaacagcaagaaagcacccgtggcctaatg 439  Q
    |||||||||||||||| |||||||||||||||   |  ||| |  |||    | || |||||||||||||||||||||||||||||||||||||||||||    
T  35796663 cttggttgattaaagataacaaaaaacgtgtgt--ttataccaaataa----ataagtaaataaaaaagtcaacagcaagaaagcacccgtggcctaatg 35796570  T
Q  440 gataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccaccgggtgtgtgtcttttgcttcttttttcttttatgtatt 526  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35796569 gataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccaccgggtgtgtgtcttttgcttcttttttcttttatgtatt 35796483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 165; E-Value: 1e-87
Query Start/End: Original strand, 763 - 989
Target Start/End: Complemental strand, 35796434 - 35796206
Alignment:
Q  763 acaatgactcatttacaaagctaacgaaaagaaatagaaaaacaatttcaaaaccgaagtccttaaaattagacccgacaatgaatcgaatcaactcgaa 862  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |  | ||||| ||||| |||||||||||||||||||||||||||    
T  35796434 acaatgactcatttacaaagctaacgaaaagaaatagaaaaacaatttcaaaagccacctacttaacattaggcccgacaatgaatcgaatcaactcgaa 35796335  T
Q  863 tatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgagcagaaatttacatattt-aagactcctat 961  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |    
T  35796334 tatagtttgaaattcgactcaacagttgattcattgaacttggttcatgaatctaacgggttgaacttgagcagaaatttacatatttaaagactcctct 35796235  T
Q  962 agtgctttacaggcgttt-agaatgcagt 989  Q
    ||||||||||| |||||| ||||||||||    
T  35796234 agtgctttacaagcgtttaagaatgcagt 35796206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 35797017 - 35796889
Alignment:
Q  7 agtttcctacaactgaataatttaaataactcattgtttgtctatttcatttgtcgacacactatacatgtctacatgttctgttctcttaaaaggcatc 106  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||        ||||||| ||||||| | |||||||    
T  35797017 agtttcctacaactaaataatttaaataactcgttgtttgtctatttcatttgtcgacacactatac--------atgttctattctctt-agaggcatc 35796927  T
Q  107 caatgtaaatgtataacacaccaaggaaagaaacaaac 144  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35796926 caatgtaaatgtataacacaccaaggaaagaaacaaac 35796889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 420 - 496
Target Start/End: Original strand, 36071561 - 36071637
Alignment:
Q  420 aaagcacccgtggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccaccgggtgtgt 496  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  36071561 aaagcgcccatggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccactgggcgtgt 36071637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 430 - 487
Target Start/End: Original strand, 43559214 - 43559271
Alignment:
Q  430 tggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccac 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43559214 tggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccac 43559271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 849 - 913
Target Start/End: Original strand, 20203731 - 20203795
Alignment:
Q  849 cgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaa 913  Q
    |||| |||||||| || |||| | ||||||| |||||||||||||| ||||| ||||||||||||    
T  20203731 cgaaccaactcgattaaagttcgtaattcgattcaacaattgattcgttgaacttggttcatgaa 20203795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 839 - 932
Target Start/End: Original strand, 27464579 - 27464672
Alignment:
Q  839 gacaatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttga 932  Q
    ||||||||| |||| ||||||||| |||||| || | | || || | ||||||||  |||||||||||||||||| | |||| || ||||||||    
T  27464579 gacaatgaaccgaaccaactcgaaaatagttcgagacttgattcgataattgatttgttgaatttggttcatgaaccaaatgagtcgaacttga 27464672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 854 - 927
Target Start/End: Complemental strand, 31995212 - 31995139
Alignment:
Q  854 caactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaa 927  Q
    |||||||||||||||||||||||| |||| |  ||| |||  |||| |||||||||| |||| |||| ||||||    
T  31995212 caactcgaatatagtttgaaattcaactcgatgattaatttgttgagtttggttcataaatcaaatgagttgaa 31995139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 1e-31; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 421 - 495
Target Start/End: Complemental strand, 41826311 - 41826237
Alignment:
Q  421 aagcacccgtggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccaccgggtgtg 495  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41826311 aagcacccgtggcctaatggataaggcgtttgacttctaatcaagcgattgtgggttcgagtcccaccgggtgtg 41826237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 839 - 939
Target Start/End: Complemental strand, 7448014 - 7447914
Alignment:
Q  839 gacaatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgagcagaa 938  Q
    ||||||||| |||| ||||||||||||||||   |||||||||| ||||||| ||||||||| |||||||||||| | |||| |  |||||||||| |||    
T  7448014 gacaatgaaccgaaccaactcgaatatagttcataattcgactcgacaattggttcattgaacttggttcatgaaccaaatgagccgaacttgagctgaa 7447915  T
Q  939 a 939  Q
    |    
T  7447914 a 7447914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 839 - 934
Target Start/End: Complemental strand, 20401134 - 20401039
Alignment:
Q  839 gacaatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgagc 934  Q
    ||||||||| |||| |||||||||||||||| ||||||||||||   ||||  | |||||||||||||||||||| ||| ||   |||||||||||    
T  20401134 gacaatgaaccgaaccaactcgaatatagttcgaaattcgactcggtaattagtccattgaatttggttcatgaacctactgaactgaacttgagc 20401039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 839 - 913
Target Start/End: Complemental strand, 3942314 - 3942240
Alignment:
Q  839 gacaatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaa 913  Q
    ||||||||| |||| |||||||| || |||| | ||||||| || ||| ||||||||||||| ||||||||||||    
T  3942314 gacaatgaaccgaaccaactcgattaaagttcgtaattcgattcgacagttgattcattgaacttggttcatgaa 3942240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 839 - 933
Target Start/End: Complemental strand, 26719953 - 26719859
Alignment:
Q  839 gacaatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgag 933  Q
    |||||||||||||| ||||||||| |||||| || | |||| || | ||||| ||||||| | |||||||||||| | |||| || |||||||||    
T  26719953 gacaatgaatcgaaccaactcgaaaatagttcgatactcgattcgataattggttcattggacttggttcatgaaccaaatgagtcgaacttgag 26719859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 839 - 913
Target Start/End: Original strand, 35543563 - 35543637
Alignment:
Q  839 gacaatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaa 913  Q
    |||||||||||||| ||||||||| ||||||||| | || | || | ||||||||| ||||| ||||||||||||    
T  35543563 gacaatgaatcgaaccaactcgaaaatagtttgagactccattcgataattgattcgttgaacttggttcatgaa 35543637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 858 - 932
Target Start/End: Complemental strand, 10096590 - 10096516
Alignment:
Q  858 tcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttga 932  Q
    ||||| |||||| |||| ||||||| ||||||  ||||| ||| |||||||||||| | |||| |||||||||||    
T  10096590 tcgaacatagttcgaaactcgactcgacaatttgttcatcgaacttggttcatgaaccaaatgagttgaacttga 10096516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 841 - 939
Target Start/End: Complemental strand, 33124831 - 33124733
Alignment:
Q  841 caatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgagcagaaa 939  Q
    ||||||| |||| ||||||||  ||||||||||| |||| || |||||| | || ||||| |||||| ||||| | ||||  |||||||||||| ||||    
T  33124831 caatgaaccgaaccaactcgacaatagtttgaaactcgattcgacaattaactcgttgaacttggtttatgaaccaaatgaattgaacttgagctgaaa 33124733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 839 - 933
Target Start/End: Original strand, 33898951 - 33899045
Alignment:
Q  839 gacaatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgag 933  Q
    ||||||||| |||| ||||||||| |||||| || |||||| || | ||||  ||||||| | |||||||||||| | |||| || |||||||||    
T  33898951 gacaatgaaccgaaccaactcgaaaatagttcgatattcgattcgagaattagttcattggacttggttcatgaaccaaatgagtcgaacttgag 33899045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 841 - 939
Target Start/End: Complemental strand, 43053008 - 43052910
Alignment:
Q  841 caatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgagcagaaa 939  Q
    ||||||| |||| |||||||| ||||||| || ||||||||| | | || || | ||||| |||||||||||| |||||| | || |||||||| ||||    
T  43053008 caatgaaccgaaccaactcgattatagttcgacattcgactcgatatttaatccgttgaacttggttcatgaacctaatgagctggacttgagccgaaa 43052910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 841 - 934
Target Start/End: Complemental strand, 389082 - 388989
Alignment:
Q  841 caatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgagc 934  Q
    ||||||| ||||||||||||| ||||||| || |||| |||| | | || || | ||||| |||||||||||| |||| | | |||||||||||    
T  389082 caatgaaccgaatcaactcgattatagttcgacattcaactcgatatttaatccgttgaacttggttcatgaacctaacgagctgaacttgagc 388989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 840 - 913
Target Start/End: Complemental strand, 45176382 - 45176309
Alignment:
Q  840 acaatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaa 913  Q
    |||||||| ||||  ||||||| |||||||||| ||||||||| | |||| || | ||||| ||||||||||||    
T  45176382 acaatgaaccgaacaaactcgattatagtttgacattcgactcgataattaatccgttgaacttggttcatgaa 45176309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 1e-31; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 422 - 496
Target Start/End: Complemental strand, 33589164 - 33589090
Alignment:
Q  422 agcacccgtggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccaccgggtgtgt 496  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  33589164 agcacccgtggcctaatggataaggcgtttgacttctaatcaagcgattgtgggttcgagtcccaccgggtgtgt 33589090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 426 - 498
Target Start/End: Complemental strand, 33583414 - 33583342
Alignment:
Q  426 cccgtggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccaccgggtgtgtgt 498  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33583414 cccgtggcctaatggataaggcgtttgacttctaatcaagcgattgtgggttcgagtcccaccgggcgtgtgt 33583342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 841 - 913
Target Start/End: Original strand, 48731182 - 48731254
Alignment:
Q  841 caatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaa 913  Q
    ||||||| |||| |||||||||||||||| |||||||||||| ||||||| | ||||||||||||||||||||    
T  48731182 caatgaaccgaaccaactcgaatatagttcgaaattcgactcgacaattggtccattgaatttggttcatgaa 48731254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 839 - 913
Target Start/End: Complemental strand, 9469910 - 9469836
Alignment:
Q  839 gacaatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaa 913  Q
    ||||||||| |||| |||||||||||||||| | |||||||||| ||||||| |  |||||| ||||||||||||    
T  9469910 gacaatgaaccgaaccaactcgaatatagttcgtaattcgactcgacaattggtctattgaacttggttcatgaa 9469836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 839 - 913
Target Start/End: Complemental strand, 36543914 - 36543840
Alignment:
Q  839 gacaatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaa 913  Q
    |||||||||  ||| |||||||||||||||| | |||||||||| ||||||| | ||||||| ||||||||||||    
T  36543914 gacaatgaactgaaccaactcgaatatagttcgtaattcgactcgacaattggtccattgaacttggttcatgaa 36543840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 839 - 939
Target Start/End: Original strand, 48339106 - 48339206
Alignment:
Q  839 gacaatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgagcagaa 938  Q
    |||||||||||||| |||||| | || |||| | ||||||| || |||| |||||  ||||| |||||||||||||| |||| || |||||||||| |||    
T  48339106 gacaatgaatcgaaccaactcaattagagttcgtaattcgattcgacaactgatttgttgaacttggttcatgaatcaaatgagtcgaacttgagctgaa 48339205  T
Q  939 a 939  Q
    |    
T  48339206 a 48339206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 841 - 939
Target Start/End: Complemental strand, 19853109 - 19853011
Alignment:
Q  841 caatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgagcagaaa 939  Q
    |||||||||||| |||||||| |||||||||| ||||||||| | | || || | ||||| |||||||||||| |||| | | || |||||||| ||||    
T  19853109 caatgaatcgaaccaactcgattatagtttgacattcgactcgatatttaatccgttgaacttggttcatgaacctaacgagatggacttgagctgaaa 19853011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 841 - 933
Target Start/End: Original strand, 12673037 - 12673129
Alignment:
Q  841 caatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgag 933  Q
    ||||||| |||| ||||||||| |||||| || |||||| || | |||||| || ||||| |||||||||||| | |||| || |||||||||    
T  12673037 caatgaaccgaaccaactcgaaaatagttcgagattcgattcgataattgactcgttgaacttggttcatgaaccaaatgagtcgaacttgag 12673129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 839 - 939
Target Start/End: Complemental strand, 27891519 - 27891420
Alignment:
Q  839 gacaatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgagcagaa 938  Q
    |||||||||||||||||||||||  |||||| | || |||| || |||||| | || ||||| |||||||||||| | |||| | ||||||||||| |||    
T  27891519 gacaatgaatcgaatcaactcgacaatagttcggaactcgattcgacaattaactcgttgaacttggttcatgaa-caaatgagctgaacttgagctgaa 27891421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 839 - 939
Target Start/End: Original strand, 36156301 - 36156401
Alignment:
Q  839 gacaatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgagcagaa 938  Q
    ||||||||| |||| |||||||| || |||| | ||||||| || ||||||||||| ||||| ||||||| |||| | |||| |  |||||||||| |||    
T  36156301 gacaatgaaccgaaccaactcgattaaagttcgtaattcgattcgacaattgattcgttgaacttggttcttgaaccaaatgagccgaacttgagctgaa 36156400  T
Q  939 a 939  Q
    |    
T  36156401 a 36156401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 839 - 934
Target Start/End: Original strand, 15697090 - 15697185
Alignment:
Q  839 gacaatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgagc 934  Q
    ||||||||| |||  ||||||||||| |||| || | ||||||| ||||||||||| ||||| ||| |||||||| | |||  | |||||||||||    
T  15697090 gacaatgaaccgagacaactcgaataaagttcgagactcgactcgacaattgattcgttgaacttgattcatgaaccaaataagctgaacttgagc 15697185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 854 - 933
Target Start/End: Original strand, 34980526 - 34980605
Alignment:
Q  854 caactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgag 933  Q
    ||||||||| ||||||||| | |||| || | ||||||||||||||| ||| |||||||||| ||||  | |||||||||    
T  34980526 caactcgaaaatagtttgagactcgattcgataattgattcattgaacttgattcatgaatcaaatgaatcgaacttgag 34980605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 850 - 909
Target Start/End: Complemental strand, 39736805 - 39736746
Alignment:
Q  850 gaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttca 909  Q
    ||||||||||||| ||||||||| | |||| || | ||||||||| ||||||||||||||    
T  39736805 gaatcaactcgaaaatagtttgagactcgattcgataattgattcgttgaatttggttca 39736746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 839 - 933
Target Start/End: Original strand, 24007910 - 24008004
Alignment:
Q  839 gacaatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgag 933  Q
    |||||||||| ||| ||||||||| |||||| || |||||| |  |  |||||||| ||||| |||||||||||| |||| | ||| ||||||||    
T  24007910 gacaatgaattgaaccaactcgaaaatagttcgagattcgatttgatgattgattcgttgaacttggttcatgaacctaacgagttaaacttgag 24008004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 839 - 932
Target Start/End: Original strand, 49083241 - 49083334
Alignment:
Q  839 gacaatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttga 932  Q
    |||||||||||||| ||||| ||  ||||||||||||| ||||| | ||||  |   ||||| ||||||||| || |||||| |||||||||||    
T  49083241 gacaatgaatcgaaccaacttgagaatagtttgaaattggactcgataattagtctgttgaacttggttcataaacctaatgagttgaacttga 49083334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 3e-29; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 421 - 495
Target Start/End: Original strand, 26918762 - 26918836
Alignment:
Q  421 aagcacccgtggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccaccgggtgtg 495  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26918762 aagcacccgtggcctaacggataaggcgtttgacttctaatcaagcgattgtgggttcgagtcccaccgggtgtg 26918836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 420 - 487
Target Start/End: Original strand, 36003019 - 36003086
Alignment:
Q  420 aaagcacccgtggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccac 487  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36003019 aaagcgcccatggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccac 36003086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 430 - 487
Target Start/End: Complemental strand, 33351117 - 33351060
Alignment:
Q  430 tggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccac 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33351117 tggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccac 33351060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 841 - 911
Target Start/End: Complemental strand, 20347797 - 20347727
Alignment:
Q  841 caatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatg 911  Q
    ||||||| |||||||||||||||||||||| ||||| ||||| |||||| |||| ||||||||| ||||||    
T  20347797 caatgaaccgaatcaactcgaatatagtttaaaatttgactcgacaattaattcgttgaatttgattcatg 20347727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 841 - 933
Target Start/End: Original strand, 40159639 - 40159731
Alignment:
Q  841 caatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgag 933  Q
    ||||||| |||| ||||||||| ||||||||| |||||| || | ||||| ||||||| | |||||||||||||| |||| || |||||||||    
T  40159639 caatgaaccgaaccaactcgaaaatagtttgatattcgattcgataattggttcattggacttggttcatgaatcaaatgagtcgaacttgag 40159731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 842 - 933
Target Start/End: Original strand, 5204479 - 5204570
Alignment:
Q  842 aatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgag 933  Q
    ||||||||||| ||||||||| ||||||||| |||||| || | |||||| || ||||| ||||||| |||| | |||| || |||||||||    
T  5204479 aatgaatcgaaccaactcgaaaatagtttgagattcgattcgataattgactcgttgaacttggttcgtgaaccaaatgagtcgaacttgag 5204570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 841 - 939
Target Start/End: Complemental strand, 35810849 - 35810751
Alignment:
Q  841 caatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgagcagaaa 939  Q
    ||||||| |||| |||||||| || |||| | ||||||| || ||||||||||| ||||| |||||||||||| | |||| |  |||||||||| ||||    
T  35810849 caatgaaccgaaccaactcgattaaagttcgtaattcgattcgacaattgattcgttgaacttggttcatgaaccaaatgagccgaacttgagctgaaa 35810751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 841 - 934
Target Start/End: Complemental strand, 42937205 - 42937112
Alignment:
Q  841 caatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgagc 934  Q
    |||||||  ||| |||||||| || |||| | ||||||| |||||||||||||| | ||| |||||||||||||| |||| |  ||||||||||    
T  42937205 caatgaactgaaccaactcgattagagttcgtaattcgattcaacaattgattcgtcgaacttggttcatgaatcaaatgagccgaacttgagc 42937112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 841 - 933
Target Start/End: Complemental strand, 28006481 - 28006389
Alignment:
Q  841 caatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgag 933  Q
    ||||||| |||| ||||||||| |||||| || |||||| || | |||||| || ||||| |||||||||||| | |||| || |||||||||    
T  28006481 caatgaaccgaaccaactcgaaaatagttcgagattcgattcgataattgactcgttgaacttggttcatgaaccaaatgagtcgaacttgag 28006389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 854 - 913
Target Start/End: Complemental strand, 11991390 - 11991331
Alignment:
Q  854 caactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaa 913  Q
    ||||||||| |||||||| || |||||||||||||| | || |||||| |||||||||||    
T  11991390 caactcgaacatagtttggaactcgactcaacaattaactctttgaatatggttcatgaa 11991331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 839 - 930
Target Start/End: Complemental strand, 31816701 - 31816610
Alignment:
Q  839 gacaatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaactt 930  Q
    ||||||||| |||| ||||||||| |||||| |||| || | ||   ||||||||| ||||| |||||||||||| | |||| |||||||||    
T  31816701 gacaatgaaccgaaccaactcgaaaatagttcgaaactcaattcggtaattgattcgttgaacttggttcatgaaccaaatgagttgaactt 31816610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 841 - 932
Target Start/End: Complemental strand, 44596648 - 44596557
Alignment:
Q  841 caatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttga 932  Q
    ||||||| |||| ||||||||  |||||||| || |||| || |||||| | || |||||||||||||||||| | |||| | |||||||||    
T  44596648 caatgaaccgaaccaactcgacaatagtttggaactcgattcgacaattaactcgttgaatttggttcatgaaccaaatgagctgaacttga 44596557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 839 - 933
Target Start/End: Original strand, 15257178 - 15257272
Alignment:
Q  839 gacaatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgag 933  Q
    ||||||||| |||| |||||| || ||||||||| | |||| || | ||||| ||||||| | |||||||||||| | |||| || |||||||||    
T  15257178 gacaatgaaccgaaccaactcaaaaatagtttgatactcgattcgataattggttcattggacttggttcatgaaccaaatgagtcgaacttgag 15257272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 5e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 420 - 487
Target Start/End: Original strand, 4271483 - 4271550
Alignment:
Q  420 aaagcacccgtggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccac 487  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4271483 aaagcgcccatggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccac 4271550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 841 - 934
Target Start/End: Complemental strand, 43384925 - 43384832
Alignment:
Q  841 caatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgagc 934  Q
    ||||||| |||| ||||||||| |||||| || |||||| || | |||| |||| ||||| |||||||||||| | |||| |||||||||||||    
T  43384925 caatgaaccgaaccaactcgaaaatagttcgagattcgattcgataattaattcgttgaagttggttcatgaaccaaatgagttgaacttgagc 43384832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 841 - 932
Target Start/End: Complemental strand, 39478181 - 39478090
Alignment:
Q  841 caatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttga 932  Q
    ||||||| |||| ||||||||| |||||| || | |||| || | ||||| ||||||| | |||||||||||| | |||| |||||||||||    
T  39478181 caatgaaccgaaccaactcgaaaatagttcgatactcgattcgataattggttcattggacttggttcatgaaccaaatgagttgaacttga 39478090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 842 - 939
Target Start/End: Original strand, 27189092 - 27189189
Alignment:
Q  842 aatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgagcagaaa 939  Q
    |||||| ||||||||||||| || |||| | |||| || || | ||||||||| | ||| |||||||||||| | |||| || |||||||||| ||||    
T  27189092 aatgaaccgaatcaactcgattagagttcgtaattagattcgataattgattcgtcgaacttggttcatgaaccaaatgagtcgaacttgagctgaaa 27189189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 2e-24; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 421 - 487
Target Start/End: Original strand, 49918005 - 49918071
Alignment:
Q  421 aagcacccgtggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccac 487  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49918005 aagcgcccatggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagtcccac 49918071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 839 - 939
Target Start/End: Original strand, 33438738 - 33438838
Alignment:
Q  839 gacaatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgagcagaa 938  Q
    ||||||||| |||| |||||||| || |||||| ||||||| || ||||||||||| ||||| |||||||||||| | |||| || |||||||||| |||    
T  33438738 gacaatgaaccgaaccaactcgattaaagtttgtaattcgattcgacaattgattcgttgaacttggttcatgaaccaaatgagtcgaacttgagctgaa 33438837  T
Q  939 a 939  Q
    |    
T  33438838 a 33438838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 839 - 939
Target Start/End: Original strand, 46293220 - 46293320
Alignment:
Q  839 gacaatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgagcagaa 938  Q
    ||||||||| |||||||||||||||||||||  ||||||||||  ||||||| |  ||||||||||||||||||| | |||| |  |||||||||| |||    
T  46293220 gacaatgaaccgaatcaactcgaatatagttcaaaattcgacttgacaattggtcaattgaatttggttcatgaaccaaatgagccgaacttgagctgaa 46293319  T
Q  939 a 939  Q
    |    
T  46293320 a 46293320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 841 - 913
Target Start/End: Original strand, 19560783 - 19560855
Alignment:
Q  841 caatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaa 913  Q
    ||||||| |||| |||||||||||||||| | |||||||||| |||||| |||| ||||| ||||||||||||    
T  19560783 caatgaaccgaaccaactcgaatatagttcggaattcgactcgacaattaattcgttgaacttggttcatgaa 19560855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 839 - 933
Target Start/End: Original strand, 30662138 - 30662232
Alignment:
Q  839 gacaatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgag 933  Q
    ||||||||  |||| ||||||||| ||||||||| |||||| || | |||||| || ||||| |||||||||||||| |||| || |||||||||    
T  30662138 gacaatgagccgaaccaactcgaaaatagtttgagattcgattcgataattgactcgttgaacttggttcatgaatcaaatgagtcgaacttgag 30662232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 849 - 939
Target Start/End: Complemental strand, 39135477 - 39135387
Alignment:
Q  849 cgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgagcagaaa 939  Q
    |||| ||||||||||||||||   |||||||||| ||||||| ||||||||| |||||||||||| | |||| |  |||||||||| ||||    
T  39135477 cgaaccaactcgaatatagttcataattcgactcgacaattggttcattgaacttggttcatgaaccaaatgagccgaacttgagctgaaa 39135387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 841 - 934
Target Start/End: Complemental strand, 25253833 - 25253740
Alignment:
Q  841 caatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgagc 934  Q
    ||||||| |||| |||||||||||||||||| || ||||||| |||||  | |  ||||| |||||||||||| | |||| | |||||||||||    
T  25253833 caatgaaccgaaccaactcgaatatagtttggaactcgactcgacaataaacttgttgaacttggttcatgaaccaaatgagctgaacttgagc 25253740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 854 - 939
Target Start/End: Original strand, 39469553 - 39469638
Alignment:
Q  854 caactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgagcagaaa 939  Q
    |||||||||||||||| | ||||||| || | ||||| | ||||||| |||||||||||||| |||| |  |||||||||| ||||    
T  39469553 caactcgaatatagttcgtaattcgattcgataattggtccattgaacttggttcatgaatcaaatgagccgaacttgagctgaaa 39469638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 841 - 933
Target Start/End: Complemental strand, 12710833 - 12710741
Alignment:
Q  841 caatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgag 933  Q
    ||||||| |||| ||||||||| |||||| || |||||| || | |||||| || ||||| |||||||||||| | |||| || |||||||||    
T  12710833 caatgaaccgaaccaactcgaaaatagttcgagattcgattcgataattgactcgttgaacttggttcatgaaccaaatgagtcgaacttgag 12710741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 841 - 933
Target Start/End: Original strand, 26049549 - 26049641
Alignment:
Q  841 caatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgag 933  Q
    ||||||| |||| ||||||||| ||||||||| |||||| || | ||||||    ||||| |||||||||||||| |||| || |||||||||    
T  26049549 caatgaaccgaaccaactcgaaaatagtttgagattcgattcgataattgacctgttgaacttggttcatgaatcaaatgagtcgaacttgag 26049641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 839 - 939
Target Start/End: Complemental strand, 52199562 - 52199462
Alignment:
Q  839 gacaatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgagcagaa 938  Q
    |||||||||||||| ||||||||  ||||||||  | |||| || |||||| |||| ||||| |||||||||||| | || | | ||||||||||| |||    
T  52199562 gacaatgaatcgaaccaactcgacaatagtttgggactcgattcgacaattaattcgttgaacttggttcatgaaccaaacgagctgaacttgagctgaa 52199463  T
Q  939 a 939  Q
    |    
T  52199462 a 52199462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 838 - 913
Target Start/End: Original strand, 47782127 - 47782202
Alignment:
Q  838 cgacaatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaa 913  Q
    |||||||||| ||| ||||||| |||||| ||| ||| ||||||| |||||  |  ||||||||||||||||||||    
T  47782127 cgacaatgaaccgagtcaactcaaatatatttttaaactcgactcgacaatcaacacattgaatttggttcatgaa 47782202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 841 - 939
Target Start/End: Original strand, 9505130 - 9505228
Alignment:
Q  841 caatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgagcagaaa 939  Q
    ||||||| |||| ||||||||  |||||| | || |||| || |||||| | || ||||| |||||||||||| | |||| ||||||||||||| ||||    
T  9505130 caatgaaccgaaccaactcgacaatagttcggaactcgattcgacaattaactcgttgaacttggttcatgaaccaaatgagttgaacttgagctgaaa 9505228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 841 - 939
Target Start/End: Original strand, 54393452 - 54393550
Alignment:
Q  841 caatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgagcagaaa 939  Q
    ||||||| |||| |||||||| || |||| | ||||||| || ||||||||||| ||||| ||||||||| || | |||| |  |||||||||| ||||    
T  54393452 caatgaaccgaaccaactcgattaaagttcgtaattcgattcgacaattgattcgttgaacttggttcataaaccaaatgagccgaacttgagctgaaa 54393550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 3e-20; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 839 - 930
Target Start/End: Complemental strand, 31621001 - 31620910
Alignment:
Q  839 gacaatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaactt 930  Q
    ||||||||| |||| ||||| |||||||||| |||||||||||| ||||||  | |||||||||||||||||||| |||||| |||||||||    
T  31621001 gacaatgaaccgaaccaacttgaatatagttcgaaattcgactcgacaattagtccattgaatttggttcatgaacctaatgagttgaactt 31620910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 841 - 939
Target Start/End: Original strand, 3801373 - 3801471
Alignment:
Q  841 caatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgagcagaaa 939  Q
    ||||||| |||| |||||||||||||||| | |||||||||| ||||||| ||||||||| |||||||||||| | |||| |  |||||||||| ||||    
T  3801373 caatgaaccgaaccaactcgaatatagttcgtaattcgactcgacaattggttcattgaacttggttcatgaaccaaatgagccgaacttgagctgaaa 3801471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 841 - 934
Target Start/End: Complemental strand, 15933294 - 15933201
Alignment:
Q  841 caatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgagc 934  Q
    ||||||| |||| |||||||| ||||||| |||||||||||| ||| || |||| ||||| |||||||||||| |||||| ||||||| |||||    
T  15933294 caatgaaccgaaccaactcgagtatagttcgaaattcgactcgacagttaattcgttgaacttggttcatgaacctaatgagttgaacatgagc 15933201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 841 - 933
Target Start/End: Complemental strand, 34857478 - 34857386
Alignment:
Q  841 caatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgag 933  Q
    ||||||| |||| ||||||||| ||||| ||| |||| | |||| ||||||||| ||||| ||| ||||||||||||||| || |||||||||    
T  34857478 caatgaaccgaaccaactcgaaaatagtgtgagattcaattcaataattgattcgttgaacttgattcatgaatctaatgagtcgaacttgag 34857386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 839 - 933
Target Start/End: Complemental strand, 27196210 - 27196116
Alignment:
Q  839 gacaatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgag 933  Q
    ||||||||| |||| ||||||||| |||||| || | |||| || | ||||||||| || ||||||||||||||| | |||| || |||||||||    
T  27196210 gacaatgaaccgaaccaactcgaaaatagttcgagactcgattcgataattgattcgttaaatttggttcatgaaccaaatgagtcgaacttgag 27196116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 841 - 913
Target Start/End: Original strand, 38522870 - 38522942
Alignment:
Q  841 caatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaa 913  Q
    ||||||| |||| |||||||||||||||| | |||| ||||| | ||||| | ||||||| ||||||||||||    
T  38522870 caatgaaccgaaccaactcgaatatagttcgtaatttgactcgataattggtccattgaacttggttcatgaa 38522942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 839 - 920
Target Start/End: Complemental strand, 43386851 - 43386768
Alignment:
Q  839 gacaatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattga--atttggttcatgaatctaatg 920  Q
    ||||||||||| |||||||| || ||||||||||||||||| || |||||| || | ||||  | |||||||||||| ||||||    
T  43386851 gacaatgaatcaaatcaacttgagtatagtttgaaattcgattcgacaattaatccgttgaacaattggttcatgaacctaatg 43386768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 839 - 934
Target Start/End: Complemental strand, 31021996 - 31021901
Alignment:
Q  839 gacaatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgagc 934  Q
    ||||||||| |||| |||||||||||||||| | || ||||||| | |||| | || |||| ||||||||||||| | |||| | |||| ||||||    
T  31021996 gacaatgaaccgaaccaactcgaatatagttcggaactcgactcgataattaactcgttgagtttggttcatgaaccaaatgagctgaatttgagc 31021901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 839 - 913
Target Start/End: Original strand, 27876102 - 27876176
Alignment:
Q  839 gacaatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaa 913  Q
    ||||||||| |||| ||||| ||| | |||| ||  || ||||||||||||||||||||||| || |||||||||    
T  27876102 gacaatgaaccgaaccaacttgaacaaagttcgaggtttgactcaacaattgattcattgaacttcgttcatgaa 27876176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 839 - 933
Target Start/End: Original strand, 32945028 - 32945122
Alignment:
Q  839 gacaatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgag 933  Q
    ||||||||| |||| ||||||||| |||||| |||| |||| ||   ||||||||| || || |||||||||||| | |||| || |||||||||    
T  32945028 gacaatgaaccgaaccaactcgaaaatagttcgaaactcgattcggtaattgattcgttaaacttggttcatgaaccaaatgagtcgaacttgag 32945122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 4e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 421 - 482
Target Start/End: Complemental strand, 6282944 - 6282883
Alignment:
Q  421 aagcacccgtggcctaatggataaggcgcttgacttctaatcaagcgattgtgggttcgagt 482  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  6282944 aagcacccatggcctaatggataaggcgcttgacttctaatcaagtgattgtgggtttgagt 6282883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 841 - 939
Target Start/End: Original strand, 10961805 - 10961903
Alignment:
Q  841 caatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgagcagaaa 939  Q
    ||||||| |||| |||||||| || |||||| |||| || || ||||||||||| ||||| |||||||||||| | |||| || ||| |||||| ||||    
T  10961805 caatgaaccgaaccaactcgattaaagtttgtaatttgattcgacaattgattcgttgaacttggttcatgaaccaaatgagtcgaatttgagctgaaa 10961903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 851 - 913
Target Start/End: Original strand, 8596855 - 8596917
Alignment:
Q  851 aatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaa 913  Q
    ||||||||||||||||||| |||| ||||||| |||||| | || | ||||||| ||||||||    
T  8596855 aatcaactcgaatatagttcgaaactcgactcgacaattaactcgtcgaatttgattcatgaa 8596917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 841 - 934
Target Start/End: Original strand, 124490 - 124583
Alignment:
Q  841 caatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgagc 934  Q
    ||||||| |||| |||||||||||||||| |||||| ||||| ||||||| | ||||||| |||||||||||| | |||| || ||||||||||    
T  124490 caatgaaccgaaccaactcgaatatagttcgaaatttgactcgacaattggtccattgaacttggttcatgaaccaaatgagtcgaacttgagc 124583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 841 - 911
Target Start/End: Complemental strand, 10120 - 10050
Alignment:
Q  841 caatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatg 911  Q
    ||||||| |||||||||||||||||||||| ||||| ||||| |||||| |||| ||||||||| ||||||    
T  10120 caatgaaccgaatcaactcgaatatagtttaaaatttgactcgacaattaattcgttgaatttgattcatg 10050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 839 - 939
Target Start/End: Original strand, 26628 - 26728
Alignment:
Q  839 gacaatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgagcagaa 938  Q
    |||||||||||||| |||||| | || |||| | ||||||| || |||| |||||  ||||| |||||||||||||| |||| || |||||||||| |||    
T  26628 gacaatgaatcgaaccaactcaattagagttcgtaattcgattcgacaactgatttgttgaacttggttcatgaatcaaatgagtcgaacttgagctgaa 26727  T
Q  939 a 939  Q
    |    
T  26728 a 26728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 839 - 933
Target Start/End: Complemental strand, 14559 - 14465
Alignment:
Q  839 gacaatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaatctaatgggttgaacttgag 933  Q
    ||||||||| |||| |||| |||| |||||| |||| |||| ||   ||||||||||||||| |||||||||||| | ||||  |||||||||||    
T  14559 gacaatgaaccgaaccaacccgaaaatagttcgaaactcgattcggtaattgattcattgaacttggttcatgaaccaaatgatttgaacttgag 14465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 839 - 913
Target Start/End: Complemental strand, 21220 - 21146
Alignment:
Q  839 gacaatgaatcgaatcaactcgaatatagtttgaaattcgactcaacaattgattcattgaatttggttcatgaa 913  Q
    ||||||||| |||| ||||||||| |||||| || | |||| || | ||||||||| ||||| ||||||||||||    
T  21220 gacaatgaaccgaaccaactcgaaaatagttcgagactcgattcgataattgattcgttgaacttggttcatgaa 21146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 231 times since January 2019
Visitors: 2563