View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0280-Insertion-2 (Length: 844)
Name: NF0280-Insertion-2
Description: NF0280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0280-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 734; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 734; E-Value: 0
Query Start/End: Original strand, 7 - 778
Target Start/End: Complemental strand, 49889278 - 49888514
Alignment:
| Q |
7 |
agcgagttcaccagagttcacacattcttgcatcgaaagcgcggtttctgtcataacatgttcacttatgttgttggacatacaatgttcagttggttca |
106 |
Q |
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| T |
49889278 |
agcgagttcaccagagttcacacattcttgcatcgaaagcgcggtttctgtcataacatgttcacttatgttgttggacatacaatgttcagttggttca |
49889179 |
T |
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| Q |
107 |
tcaaccaaagttactgcagcaatggtgtcatttgactctaccatctttatggtagtcaattcttcagctaccttctctttaccatcctcttgtgctgatg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49889178 |
tcaaccaaagttactgcagcaatggtgtcatttgactctaccatctttatggtagtcaattcttcagctaccttctctttaccatcctcttgtgctgatg |
49889079 |
T |
|
| Q |
207 |
aaacttcaatggagacatctgaagttagttttgtgtttttcttctggtaaactcctttggcctgtaaaatggataactaatcggcattaacaatgacagc |
306 |
Q |
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| T |
49889078 |
aaacttcaatggagacatctgaagttagttttgtgtttttcttctggtaaactcctttggcctgtaaaatggataactaatcggcattaacaatgacagc |
49888979 |
T |
|
| Q |
307 |
aactaaagtcttctactatgtaacaattatgtcatagtgttctattgtgaatcatgtctaaaaacaaactatttaaatcggttatgagtcatttgcaata |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49888978 |
aactaaagtcttctactatgtaacaattatgtcatagtgttctattgtgaatcatgtctaaaaacaaactatttaaatcggttatgagtcatttgtaata |
49888879 |
T |
|
| Q |
407 |
gttctctttacctcttactattggacaatctttcgtctaatctactctctttactagggtctctacttcgtacttccacacatgtctctaccacctaaga |
506 |
Q |
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| T |
49888878 |
gttctctttacctcttactattggacaatctttcgtctaatctactctctttactagggtctcta-------cttccacacatgtctctaccacctaaga |
49888786 |
T |
|
| Q |
507 |
tgagattctacaatttatataaattgagagcattttgtatctttcatataacattgcaagtcttgtagctgtgtaatgaaaattttatgttttgggtaca |
606 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49888785 |
tgagattctacaatttatataaattgagagcattttgcacctttcatataacattgcaagtcttgtagctgtgtaatgaaaattttatgttttgggtaca |
49888686 |
T |
|
| Q |
607 |
aaacccctctagcaatttcagtatgttacagctgacttacatatccaactttgaaggcaactctattacgagtttgctcgaccaagttcaattggtacat |
706 |
Q |
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| T |
49888685 |
aaacccctctagcaatttcagtatgttacagctgacttacatatccaactttgaaggcaactctattacgagtttgctcgaccaagttcaattggtacat |
49888586 |
T |
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| Q |
707 |
tttattttatggcatatatgacactaatgatttttcattccgaatacctagatagatcaatctgcatctttg |
778 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49888585 |
tttattttatggcatatatgacactaatgatttttcattccgaatacctagatagatcaatctgcatctttg |
49888514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 805 - 844
Target Start/End: Complemental strand, 49888488 - 49888449
Alignment:
| Q |
805 |
attttctaatgatatggtgataacaacaaccaaacctttt |
844 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
49888488 |
attttctaatgatatggtgataacaacaaccaaacctttt |
49888449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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