View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0280-Insertion-3 (Length: 865)

Name: NF0280-Insertion-3
Description: NF0280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0280-Insertion-3
NF0280-Insertion-3
[»] chr8 (11 HSPs)
chr8 (346-865)||(44712185-44712699)
chr8 (6-125)||(44711853-44711972)
chr8 (241-310)||(44712080-44712149)
chr8 (244-311)||(24116155-24116222)
chr8 (689-772)||(10309772-10309855)
chr8 (689-772)||(12171981-12172065)
chr8 (689-772)||(12416409-12416493)
chr8 (699-778)||(36023189-36023268)
chr8 (803-849)||(37820895-37820941)
chr8 (689-734)||(40649561-40649606)
chr8 (244-301)||(42131111-42131168)
[»] chr3 (6 HSPs)
chr3 (689-772)||(50886491-50886574)
chr3 (689-778)||(37279154-37279243)
chr3 (244-311)||(27646613-27646680)
chr3 (690-772)||(4617774-4617856)
chr3 (589-634)||(50886397-50886442)
chr3 (689-735)||(31425627-31425673)
[»] chr2 (6 HSPs)
chr2 (689-778)||(36193611-36193700)
chr2 (689-790)||(4969407-4969509)
chr2 (802-865)||(816411-816474)
chr2 (244-307)||(34101104-34101167)
chr2 (594-649)||(36193736-36193791)
chr2 (594-649)||(41195588-41195643)
[»] scaffold0481 (1 HSPs)
scaffold0481 (689-772)||(1092-1175)
[»] chr7 (5 HSPs)
chr7 (689-772)||(17117049-17117132)
chr7 (690-772)||(28565951-28566032)
chr7 (690-772)||(2819351-2819433)
chr7 (244-312)||(40507243-40507311)
chr7 (689-772)||(12651213-12651296)
[»] chr1 (11 HSPs)
chr1 (693-772)||(29936843-29936922)
chr1 (241-312)||(47113706-47113777)
chr1 (690-772)||(5466226-5466308)
chr1 (689-772)||(35414467-35414550)
chr1 (689-779)||(41411053-41411143)
chr1 (689-771)||(18982600-18982682)
chr1 (692-767)||(36775205-36775280)
chr1 (689-772)||(38762207-38762290)
chr1 (586-649)||(41677336-41677399)
chr1 (276-310)||(1156613-1156647)
chr1 (689-778)||(49660064-49660153)
[»] chr6 (3 HSPs)
chr6 (689-780)||(2204286-2204377)
chr6 (693-771)||(28982533-28982611)
chr6 (689-779)||(34383742-34383832)
[»] chr4 (8 HSPs)
chr4 (689-777)||(23719407-23719495)
chr4 (700-772)||(54199203-54199275)
chr4 (244-311)||(44250118-44250185)
chr4 (694-772)||(54342884-54342962)
chr4 (244-308)||(48722184-48722248)
chr4 (717-777)||(54128171-54128231)
chr4 (276-311)||(52911690-52911725)
chr4 (802-860)||(32057724-32057782)
[»] chr5 (2 HSPs)
chr5 (689-779)||(13739533-13739623)
chr5 (244-306)||(37425643-37425705)


Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-178; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 346 - 865
Target Start/End: Original strand, 44712185 - 44712699
Alignment:
Q  346 gaattaaagattccgagaatttcggttaaattggcgggaaattggtgggtggcagctagcgaattttttgggattttcaatactttctcttaccgggtcc 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44712185 gaattaaagattccgagaatttcggttaaattggcgggaaattggtgggtggcagctagcgaattttttgggattttcaatactttctcttaccgggtcc 44712284  T
Q  446 tacaggacattcactctcaaccaaccaacaccgttcgatcatattccaatccaaccgcatcagatcatttaccttcccgcctattgtacggtactttatt 545  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44712285 tacaggacattcactcttaaccaaccaacaccgttcgatcatattccaatccaaccgcatcagatcatttaccttcccgcctattgtacggtactttatt 44712384  T
Q  546 ccttacacttgcacccaaagaaagcacnnnnnnnnnnnngtttagagcaatgatatttgaataatcatttttaacaatttcggtgacaattgtctttctc 645  Q
    || ||||||||||||||||||||||||              |||||||||||||||||||| || ||||||||| ||||||||||| ||||||| |||||    
T  44712385 ccctacacttgcacccaaagaaagcactttttattttaa--ttagagcaatgatatttgaacaaccatttttaataatttcggtgataattgtcattctc 44712482  T
Q  646 atacattagttgtactcttattttctcnnnnnnnnnnnnnnnnctctctattattattatccaataaaaatggaggaaaaaggttgtcatccaaagttgt 745  Q
    |||||   |||||||| ||||| |||                 |||||||||  ||||   |||||| ||| ||||||||||||||||||||||||||||    
T  44712483 atacacacgttgtacttttattctct---ttattcttttttctctctctattgctattgctcaataagaatagaggaaaaaggttgtcatccaaagttgt 44712579  T
Q  746 ctaaaattggttattaaaatatcattcatcttttgcttattatttcactttctttttagatagaaaagatgacgaaaccatcgtaaactcacacatacaa 845  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44712580 ctaaaattggttattaaaatatcattcctcttttgcttattatttcactttttttttagatagaaaagatgacgaaaccattgtaaactcacacatacaa 44712679  T
Q  846 agtgaacgtaccggggttcg 865  Q
    |||||| ||| |||| ||||    
T  44712680 agtgaatgtatcgggattcg 44712699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 6 - 125
Target Start/End: Original strand, 44711853 - 44711972
Alignment:
Q  6 cactatgagctaccacggcttctaatttggggttttgagtaagatttttgtgagttatttgtatcttttgggccaccacataattgattttttatttcat 105  Q
    |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44711853 cactatgagctaccgcaacttctaatttggggttttgagtaagatttttgtgagttatttgtatcttttgggccaccacataattgattttttatttcat 44711952  T
Q  106 ttatttataatgagtatatg 125  Q
    ||||||||||||||||||||    
T  44711953 ttatttataatgagtatatg 44711972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 44712080 - 44712149
Alignment:
Q  241 actaatagaaatagagaaaataaaaattgtctttaaagttgtcaccaatcgttgttcatatatcattgct 310  Q
    ||||||| ||||||||||||||||| ||||||| |||||||||||| || ||||||||||||||||||||    
T  44712080 actaatataaatagagaaaataaaagttgtcttgaaagttgtcaccgatggttgttcatatatcattgct 44712149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 244 - 311
Target Start/End: Original strand, 24116155 - 24116222
Alignment:
Q  244 aatagaaatagagaaaataaaaattgtctttaaagttgtcaccaatcgttgttcatatatcattgctc 311  Q
    ||||||||||||||||||  || ||||| |  |||||||||||||| |||||||||||||||||||||    
T  24116155 aatagaaatagagaaaattgaagttgtcatggaagttgtcaccaatggttgttcatatatcattgctc 24116222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 689 - 772
Target Start/End: Complemental strand, 10309855 - 10309772
Alignment:
Q  689 ctctctattattattatccaataaaaatggaggaaaaaggttgtcatccaaagttgtctaaaattggttattaaaatatcattc 772  Q
    |||| |||| ||||| ||||||||||| | |||||||||||| ||| ||||| |||| |||||||| || | ||||||||||||    
T  10309855 ctctttattgttattgtccaataaaaaagaaggaaaaaggttatcacccaaaattgtttaaaattgattgtcaaaatatcattc 10309772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 689 - 772
Target Start/End: Complemental strand, 12172065 - 12171981
Alignment:
Q  689 ctctctattattattatccaa-taaaaatggaggaaaaaggttgtcatccaaagttgtctaaaattggttattaaaatatcattc 772  Q
    ||||||||| ||||| ||||| ||| || ||||||||||||||||||   ||| |||| ||||||||||| | ||||||||||||    
T  12172065 ctctctattgttattgtccaaataagaagggaggaaaaaggttgtcactaaaatttgtttaaaattggttgtcaaaatatcattc 12171981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 689 - 772
Target Start/End: Complemental strand, 12416493 - 12416409
Alignment:
Q  689 ctctctattattattatccaa-taaaaatggaggaaaaaggttgtcatccaaagttgtctaaaattggttattaaaatatcattc 772  Q
    ||||||||| ||||| ||||| ||| || ||||||||||||||||||   ||| |||| ||||||||||| | ||||||||||||    
T  12416493 ctctctattgttattgtccaaataagaagggaggaaaaaggttgtcactaaaatttgtttaaaattggttgtcaaaatatcattc 12416409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 699 - 778
Target Start/End: Original strand, 36023189 - 36023268
Alignment:
Q  699 ttattatccaataaaaatggaggaaaaaggttgtcatccaaagttgtctaaaattggttattaaaatatcattcatcttt 778  Q
    ||||| |||||| |||| ||||||||||| |||||| ||||| || | |||||||| || | |||||||||||| |||||    
T  36023189 ttattgtccaattaaaagggaggaaaaagattgtcacccaaaattatttaaaattgattgtcaaaatatcattcttcttt 36023268  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 803 - 849
Target Start/End: Original strand, 37820895 - 37820941
Alignment:
Q  803 agatagaaaagatgacgaaaccatcgtaaactcacacatacaaagtg 849  Q
    |||||||| ||||||| |||||||| |||||||||||| ||||||||    
T  37820895 agatagaagagatgacaaaaccatcataaactcacacacacaaagtg 37820941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 734
Target Start/End: Original strand, 40649561 - 40649606
Alignment:
Q  689 ctctctattattattatccaataaaaatggaggaaaaaggttgtca 734  Q
    |||||||||  |||| |||||||||||| |||||||||||||||||    
T  40649561 ctctctattgctattgtccaataaaaatagaggaaaaaggttgtca 40649606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 42131111 - 42131168
Alignment:
Q  244 aatagaaatagagaaaataaaaattgtctttaaagttgtcaccaatcgttgttcatat 301  Q
    ||||||||||||| |||  ||| ||||||| |||||||||| |||| |||||||||||    
T  42131111 aatagaaatagaggaaaataaagttgtcttgaaagttgtcaacaatggttgttcatat 42131168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 9e-23; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 689 - 772
Target Start/End: Original strand, 50886491 - 50886574
Alignment:
Q  689 ctctctattattattatccaataaaaatggaggaaaaaggttgtcatccaaagttgtctaaaattggttattaaaatatcattc 772  Q
    |||||||||  |||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||    
T  50886491 ctctctattgctattgtccaataagaatggaggaaaaaggttgtcacccaaagttgtctaaaattggttgtcaaaatatcattc 50886574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 689 - 778
Target Start/End: Complemental strand, 37279243 - 37279154
Alignment:
Q  689 ctctctattattattatccaataaaaatggaggaaaaaggttgtcatccaaagttgtctaaaattggttattaaaatatcattcatcttt 778  Q
    ||||||||| ||||||||||||||||||| |||||||| ||| ||||||||| || | | ||||| | | | |||||||||||| |||||    
T  37279243 ctctctattgttattatccaataaaaatgaaggaaaaaagttatcatccaaaattatttgaaattagatgtcaaaatatcattcctcttt 37279154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 244 - 311
Target Start/End: Original strand, 27646613 - 27646680
Alignment:
Q  244 aatagaaatagagaaaataaaaattgtctttaaagttgtcaccaatcgttgttcatatatcattgctc 311  Q
    ||||||||||||| |||  ||| ||||| | |||||||||| |||| |||||||||||||||||||||    
T  27646613 aatagaaatagaggaaaataaagttgtcatgaaagttgtcaacaatagttgttcatatatcattgctc 27646680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 690 - 772
Target Start/End: Original strand, 4617774 - 4617856
Alignment:
Q  690 tctctattattattatccaataaaaatggaggaaaaaggttgtcatccaaagttgtctaaaattggttattaaaatatcattc 772  Q
    |||||||| ||||| |||||||||||| |||||||||   ||||||||||| |||| | ||||||| | | ||||||||||||    
T  4617774 tctctattgttattgtccaataaaaatagaggaaaaaaactgtcatccaaaattgtttgaaattggatgtcaaaatatcattc 4617856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 589 - 634
Target Start/End: Original strand, 50886397 - 50886442
Alignment:
Q  589 agagcaatgatatttgaataatcatttttaacaatttcggtgacaa 634  Q
    |||| ||||||||||||| ||||||||||||||| |||||||||||    
T  50886397 agagaaatgatatttgaacaatcatttttaacaacttcggtgacaa 50886442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 735
Target Start/End: Original strand, 31425627 - 31425673
Alignment:
Q  689 ctctctattattattatccaataaaaatggaggaaaaaggttgtcat 735  Q
    ||||||||| ||||| |||||||||||  ||||||||||||||||||    
T  31425627 ctctctattgttattgtccaataaaaagagaggaaaaaggttgtcat 31425673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 4e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 689 - 778
Target Start/End: Complemental strand, 36193700 - 36193611
Alignment:
Q  689 ctctctattattattatccaataaaaatggaggaaaaaggttgtcatccaaagttgtctaaaattggttattaaaatatcattcatcttt 778  Q
    |||||||||  |||| |||||||| |||||||||||||| || | |||||||||||||||||||||||| | |||||||||||| |||||    
T  36193700 ctctctattgctattgtccaataagaatggaggaaaaagattataatccaaagttgtctaaaattggttgtcaaaatatcattcctcttt 36193611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 689 - 790
Target Start/End: Complemental strand, 4969509 - 4969407
Alignment:
Q  689 ctctctattattattatccaataaaaatggaggaaaaag-gttgtcatccaaagttgtctaaaattggttattaaaatatcattcatcttttgcttatta 787  Q
    ||||||||| ||||| |||||||| |||  ||||||||  |||||||||||||||||| | ||||||| | | ||||||||||||||||| |  ||||||    
T  4969509 ctctctattgttattgtccaataagaataaaggaaaaaaagttgtcatccaaagttgtttgaaattggatgtcaaaatatcattcatcttattattatta 4969410  T
Q  788 ttt 790  Q
    |||    
T  4969409 ttt 4969407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 802 - 865
Target Start/End: Complemental strand, 816474 - 816411
Alignment:
Q  802 tagatagaaaagatgacgaaaccatcgtaaactcacacatacaaagtgaacgtaccggggttcg 865  Q
    ||||||||  ||||| | |||||||| |||||||||||| |||||||| | |||||||||||||    
T  816474 tagatagacgagatggcaaaaccatcataaactcacacacacaaagtggatgtaccggggttcg 816411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 307
Target Start/End: Original strand, 34101104 - 34101167
Alignment:
Q  244 aatagaaatagagaaaataaaaattgtctttaaagttgtcaccaatcgttgttcatatatcatt 307  Q
    |||| |||||||| |||| ||| || |||| ||||||||||||||| ||| |||||||||||||    
T  34101104 aataaaaatagaggaaatgaaagttatcttgaaagttgtcaccaatggttcttcatatatcatt 34101167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 649
Target Start/End: Complemental strand, 36193791 - 36193736
Alignment:
Q  594 aatgatatttgaataatcatttttaacaatttcggtgacaattgtctttctcatac 649  Q
    ||||||||||||| || |||||||||||| ||||||||||| | ||| ||||||||    
T  36193791 aatgatatttgaacaaccatttttaacaacttcggtgacaactttctctctcatac 36193736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 649
Target Start/End: Original strand, 41195588 - 41195643
Alignment:
Q  594 aatgatatttgaataatcatttttaacaatttcggtgacaattgtctttctcatac 649  Q
    |||||||||||||||||||||||| |||| ||  ||||||||| ||| ||||||||    
T  41195588 aatgatatttgaataatcatttttgacaacttttgtgacaattttctctctcatac 41195643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 689 - 772
Target Start/End: Complemental strand, 1175 - 1092
Alignment:
Q  689 ctctctattattattatccaataaaaatggaggaaaaaggttgtcatccaaagttgtctaaaattggttattaaaatatcattc 772  Q
    ||||||||| ||||| |||||||| ||  ||||||||||||||||| |||||||||| ||||||||||| | ||||||||||||    
T  1175 ctctctattgttattgtccaataagaagtgaggaaaaaggttgtcacccaaagttgtttaaaattggttgtcaaaatatcattc 1092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 6e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 689 - 772
Target Start/End: Complemental strand, 17117132 - 17117049
Alignment:
Q  689 ctctctattattattatccaataaaaatggaggaaaaaggttgtcatccaaagttgtctaaaattggttattaaaatatcattc 772  Q
    |||||||||  |||| |||| ||| ||||||||||||||||||||| ||||| |||||||||||||||| | ||||||||||||    
T  17117132 ctctctattgctattgtccagtaagaatggaggaaaaaggttgtcacccaaaattgtctaaaattggttgtcaaaatatcattc 17117049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 690 - 772
Target Start/End: Complemental strand, 28566032 - 28565951
Alignment:
Q  690 tctctattattattatccaataaaaatggaggaaaaaggttgtcatccaaagttgtctaaaattggttattaaaatatcattc 772  Q
    |||||||| ||||||||||||||||| ||||| |||||||||||  |||||||||| |||||||| || | ||||||||||||    
T  28566032 tctctatttttattatccaataaaaaaggagg-aaaaggttgtctcccaaagttgtttaaaattgattgtcaaaatatcattc 28565951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 690 - 772
Target Start/End: Original strand, 2819351 - 2819433
Alignment:
Q  690 tctctattattattatccaataaaaatggaggaaaaaggttgtcatccaaagttgtctaaaattggttattaaaatatcattc 772  Q
    |||||||| ||||| |||||||||||  |||||||||||||||||   ||| ||||  |||||||||| | ||||||||||||    
T  2819351 tctctattgttattgtccaataaaaagagaggaaaaaggttgtcactaaaaattgttgaaaattggttgtcaaaatatcattc 2819433  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 40507243 - 40507311
Alignment:
Q  244 aatagaaatagagaaaataaaaattgtctttaaagttgtcaccaatcgttgttcatatatcattgctct 312  Q
    |||||||||||||||||| ||| ||||| |  ||||||| |  ||| ||||||||||||||||||||||    
T  40507243 aatagaaatagagaaaattaaagttgtcatggaagttgttattaatggttgttcatatatcattgctct 40507311  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 772
Target Start/End: Complemental strand, 12651296 - 12651213
Alignment:
Q  689 ctctctattattattatccaataaaaatggaggaaaaaggttgtcatccaaagttgtctaaaattggttattaaaatatcattc 772  Q
    ||||||||| ||||| ||||||| |||  ||||||||| ||||||| | ||||||||   ||||||||| | ||||||||||||    
T  12651296 ctctctattgttattgtccaatagaaaaagaggaaaaaagttgtcaccaaaagttgttggaaattggttgtcaaaatatcattc 12651213  T

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Target: chr1 (Bit Score: 48; Significance: 6e-18; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 693 - 772
Target Start/End: Original strand, 29936843 - 29936922
Alignment:
Q  693 ctattattattatccaataaaaatggaggaaaaaggttgtcatccaaagttgtctaaaattggttattaaaatatcattc 772  Q
    ||||| ||||||| |||||| ||||||||||||| ||||| | |||||||||| ||||||||||| ||||||||||||||    
T  29936843 ctattgttattattcaataagaatggaggaaaaaagttgttacccaaagttgtttaaaattggttgttaaaatatcattc 29936922  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 241 - 312
Target Start/End: Original strand, 47113706 - 47113777
Alignment:
Q  241 actaatagaaatagagaaaataaaaattgtctttaaagttgtcaccaatcgttgttcatatatcattgctct 312  Q
    ||||||||||||||||||||  ||| ||||||| |||||||||| |||| ||||||||||||||||||||||    
T  47113706 actaatagaaatagagaaaaataaagttgtcttaaaagttgtcaacaatggttgttcatatatcattgctct 47113777  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 690 - 772
Target Start/End: Complemental strand, 5466308 - 5466226
Alignment:
Q  690 tctctattattattatccaataaaaatggaggaaaaaggttgtcatccaaagttgtctaaaattggttattaaaatatcattc 772  Q
    |||||||| ||||| |||||||| ||  ||||||||||||||||| |||||||||| ||||||||||| | ||||||||||||    
T  5466308 tctctattgttattgtccaataagaagtgaggaaaaaggttgtcacccaaagttgtttaaaattggttgtcaaaatatcattc 5466226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 689 - 772
Target Start/End: Complemental strand, 35414550 - 35414467
Alignment:
Q  689 ctctctattattattatccaataaaaatggaggaaaaaggttgtcatccaaagttgtctaaaattggttattaaaatatcattc 772  Q
    ||||||||| ||||| |||||||| ||| ||||||||| |||||||||||||||| | ||||||||| | | ||||||||||||    
T  35414550 ctctctattgttattgtccaataagaatagaggaaaaaagttgtcatccaaagttatttaaaattggatgtcaaaatatcattc 35414467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 689 - 779
Target Start/End: Original strand, 41411053 - 41411143
Alignment:
Q  689 ctctctattattattatccaataaaaatggaggaaaaaggttgtcatccaaagttgtctaaaattggttattaaaatatcattcatctttt 779  Q
    ||||||||| ||||| |||||||| ||||||||||||| |||||||||||||  ||| | ||||| | | | |||||||||||||||||||    
T  41411053 ctctctattgttattgtccaataagaatggaggaaaaaagttgtcatccaaaactgtttgaaattagatgtcaaaatatcattcatctttt 41411143  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 689 - 771
Target Start/End: Original strand, 18982600 - 18982682
Alignment:
Q  689 ctctctattattattatccaataaaaatggaggaaaaaggttgtcatccaaagttgtctaaaattggttattaaaatatcatt 771  Q
    ||||||||| || ||||||||||||||  ||  ||||| ||||||| ||||||||||   ||||||||||| |||||||||||    
T  18982600 ctctctattgttgttatccaataaaaaaagataaaaaatgttgtcacccaaagttgttggaaattggttatcaaaatatcatt 18982682  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 692 - 767
Target Start/End: Original strand, 36775205 - 36775280
Alignment:
Q  692 tctattattattatccaataaaaatggaggaaaaaggttgtcatccaaagttgtctaaaattggttattaaaatat 767  Q
    |||||| ||||| |||||||||||  ||| ||||||||||||| ||||||||||   ||||||||| | |||||||    
T  36775205 tctattgttattgtccaataaaaaaagagaaaaaaggttgtcacccaaagttgttggaaattggttgtcaaaatat 36775280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 772
Target Start/End: Complemental strand, 38762290 - 38762207
Alignment:
Q  689 ctctctattattattatccaataaaaatggaggaaaaaggttgtcatccaaagttgtctaaaattggttattaaaatatcattc 772  Q
    ||||||||||||||| | |||||| || | || ||||||||||||    |||||||| ||||||||||| | ||||||||||||    
T  38762290 ctctctattattattgttcaataagaaggaagaaaaaaggttgtccctaaaagttgtttaaaattggttgtcaaaatatcattc 38762207  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 586 - 649
Target Start/End: Complemental strand, 41677399 - 41677336
Alignment:
Q  586 tttagagcaatgatatttgaataatcatttttaacaatttcggtgacaattgtctttctcatac 649  Q
    ||||||| ||||||||||||| |||||||||| | |||||| ||||||| ||||| | ||||||    
T  41677399 tttagagaaatgatatttgaacaatcattttttataatttctgtgacaactgtctctttcatac 41677336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 276 - 310
Target Start/End: Original strand, 1156613 - 1156647
Alignment:
Q  276 aagttgtcaccaatcgttgttcatatatcattgct 310  Q
    |||||||||||||| ||||||||||||||||||||    
T  1156613 aagttgtcaccaatggttgttcatatatcattgct 1156647  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 778
Target Start/End: Original strand, 49660064 - 49660153
Alignment:
Q  689 ctctctattattattatccaataaaaatggaggaaaaaggttgtcatccaaagttgtctaaaattggttattaaaatatcattcatcttt 778  Q
    ||||||||| | ||| || ||||| ||| ||||||||| ||||||| |||||||||| |  |||||| | | |||||||||||| |||||    
T  49660064 ctctctattgtaattgtctaataagaatagaggaaaaaagttgtcacccaaagttgtttggaattggatgtcaaaatatcattcctcttt 49660153  T

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Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 689 - 780
Target Start/End: Complemental strand, 2204377 - 2204286
Alignment:
Q  689 ctctctattattattatccaataaaaatggaggaaaaaggttgtcatccaaagttgtctaaaattggttattaaaatatcattcatcttttg 780  Q
    ||||||||||||||| |||||||||||  |||||||||||||||||   ||||||||   |||||| |||||||||||||| || |||||||    
T  2204377 ctctctattattattgtccaataaaaagagaggaaaaaggttgtcactaaaagttgttggaaattgattattaaaatatcactcctcttttg 2204286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 693 - 771
Target Start/End: Complemental strand, 28982611 - 28982533
Alignment:
Q  693 ctattattattatccaataaaaatggaggaaaaaggttgtcatccaaagttgtctaaaattggttattaaaatatcatt 771  Q
    ||||||||||| |||||||||||  |||||||||||||||||   ||||||||  |||||||||| | |||||||||||    
T  28982611 ctattattattgtccaataaaaagagaggaaaaaggttgtcactaaaagttgttgaaaattggttgtcaaaatatcatt 28982533  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 779
Target Start/End: Complemental strand, 34383832 - 34383742
Alignment:
Q  689 ctctctattattattatccaataaaaatggaggaaaaaggttgtcatccaaagttgtctaaaattggttattaaaatatcattcatctttt 779  Q
    ||||||||| ||||| |||||||||||  |||||||| ||||||||   ||||||||   ||||||| | | |||||||||||| ||||||    
T  34383832 ctctctattgttattgtccaataaaaagagaggaaaagggttgtcactaaaagttgttagaaattggatgtcaaaatatcattcctctttt 34383742  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 689 - 777
Target Start/End: Complemental strand, 23719495 - 23719407
Alignment:
Q  689 ctctctattattattatccaataaaaatggaggaaaaaggttgtcatccaaagttgtctaaaattggttattaaaatatcattcatctt 777  Q
    ||||||||| ||||| || ||||| || || |||||||||||||||| ||||||||| | ||||||||| | |||||||||||| ||||    
T  23719495 ctctctattgttattgtcgaataagaaaggcggaaaaaggttgtcattcaaagttgtttcaaattggttgtcaaaatatcattcctctt 23719407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 700 - 772
Target Start/End: Original strand, 54199203 - 54199275
Alignment:
Q  700 tattatccaataaaaatggaggaaaaaggttgtcatccaaagttgtctaaaattggttattaaaatatcattc 772  Q
    |||| ||||||||||||||| |||||||| | ||| ||||| |||||||||||||||| | ||||||||||||    
T  54199203 tattgtccaataaaaatggaagaaaaaggctctcacccaaaattgtctaaaattggttgtcaaaatatcattc 54199275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 244 - 311
Target Start/End: Complemental strand, 44250185 - 44250118
Alignment:
Q  244 aatagaaatagagaaaataaaaattgtctttaaagttgtcaccaatcgttgttcatatatcattgctc 311  Q
    ||||||||||||||||||  || ||||| | |||||||||||||||  ||||||||||||||||||||    
T  44250185 aatagaaatagagaaaattgaagttgtcatgaaagttgtcaccaatgattgttcatatatcattgctc 44250118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 694 - 772
Target Start/End: Original strand, 54342884 - 54342962
Alignment:
Q  694 tattattattatccaataaaaatggaggaaaaaggttgtcatccaaagttgtctaaaattggttattaaaatatcattc 772  Q
    |||| ||||| |||||||| || ||||||| |||||||||| |||||||||| ||||||||||| | || |||||||||    
T  54342884 tattgttattgtccaataagaaaggaggaacaaggttgtcacccaaagttgtttaaaattggttgtcaagatatcattc 54342962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 48722184 - 48722248
Alignment:
Q  244 aatagaaatagagaaaataaaaattgtctttaaagttgtcaccaatcgttgttcatatatcattg 308  Q
    ||||||||||||||||||  |||||||| |  |||||||||||||| |||||||||| |||||||    
T  48722184 aatagaaatagagaaaattgaaattgtcatggaagttgtcaccaatggttgttcatacatcattg 48722248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 717 - 777
Target Start/End: Original strand, 54128171 - 54128231
Alignment:
Q  717 ggaggaaaaaggttgtcatccaaagttgtctaaaattggttattaaaatatcattcatctt 777  Q
    ||||||||||||||||||   |||||||| ||||||||||| | |||||||||||| ||||    
T  54128171 ggaggaaaaaggttgtcactaaaagttgtttaaaattggttgtcaaaatatcattcctctt 54128231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 276 - 311
Target Start/End: Complemental strand, 52911725 - 52911690
Alignment:
Q  276 aagttgtcaccaatcgttgttcatatatcattgctc 311  Q
    |||||||||||||| |||||||||||||||||||||    
T  52911725 aagttgtcaccaatggttgttcatatatcattgctc 52911690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 802 - 860
Target Start/End: Original strand, 32057724 - 32057782
Alignment:
Q  802 tagatagaaaagatgacgaaaccatcgtaaactcacacatacaaagtgaacgtaccggg 860  Q
    ||||||||  ||||||| |||||||| |||||||||||| |||||||| | ||||||||    
T  32057724 tagatagacgagatgacaaaaccatcataaactcacacacacaaagtggaggtaccggg 32057782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 689 - 779
Target Start/End: Original strand, 13739533 - 13739623
Alignment:
Q  689 ctctctattattattatccaataaaaatggaggaaaaaggttgtcatccaaagttgtctaaaattggttattaaaatatcattcatctttt 779  Q
    ||||||||||||||| ||||||||||| | || ||||||||||||    |||||||| |||| |||||| | |||||||||||| ||||||    
T  13739533 ctctctattattattgtccaataaaaaggaagaaaaaaggttgtccctaaaagttgtttaaagttggttgtcaaaatatcattcctctttt 13739623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 37425705 - 37425643
Alignment:
Q  244 aatagaaatagagaaaataaaaattgtctttaaagttgtcaccaatcgttgttcatatatcat 306  Q
    ||||||||||||||||||  || |||||||  |||||||||||||  ||||||||||||||||    
T  37425705 aatagaaatagagaaaattgaagttgtcttggaagttgtcaccaacggttgttcatatatcat 37425643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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