View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0280-Insertion-5 (Length: 263)
Name: NF0280-Insertion-5
Description: NF0280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0280-Insertion-5 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 78 - 263
Target Start/End: Complemental strand, 30908858 - 30908673
Alignment:
| Q |
78 |
attcatatgggtctgtgactggagatcgatactatggagcaaaggctacaataaatttgtggtccccacatgtggaaggtgaaaaagaattcagcttgtc |
177 |
Q |
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| T |
30908858 |
attcatatgggtctgtgactggagatcgatactatggagcaaaggctacaataaatttgtggtccccacatgtggaaggtgaaaaagaattcagcttgtc |
30908759 |
T |
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| Q |
178 |
tcaaatatggctcgtcactggtagaaattccaacaccattgaagctggttggcaggcatgttaaattaattacatatacatggtta |
263 |
Q |
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| T |
30908758 |
tcaaatatggctcgtcactggtagaaatgccaacaccattgaagctggttggcaggtatgttaaattaattacatatacatggtta |
30908673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 85 - 253
Target Start/End: Complemental strand, 30918948 - 30918781
Alignment:
| Q |
85 |
tgggtctgtgactggagatcgatactatggagcaaaggctacaataaatttgtggtccccacatgtggaaggtgaaaaagaattcagcttgtctcaaata |
184 |
Q |
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| T |
30918948 |
tgggtatgtgaccggagatctgtactatggagcaaaggctacaataaatttgtggtccccacatgtggaaggtgaaaaagaattcagcttgtctcaaata |
30918849 |
T |
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| Q |
185 |
tggctcgtcactggtagaaattccaacaccattgaagctggttggcaggcatgttaaattaattacata |
253 |
Q |
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| T |
30918848 |
tggctgacgaccggtagaaattccaacaccattgaagctggttggcaggcatgtt-aattaattacata |
30918781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 21 - 239
Target Start/End: Complemental strand, 30928844 - 30928627
Alignment:
| Q |
21 |
attttaaaaatgaa--ataagaaatggattctgctactgattgttctacgctgcatagtattcatatgggtctgtgactggagatcgatactatggagca |
118 |
Q |
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| T |
30928844 |
attttgaaaatgaattataagaaatggattcttct---gattgctctacactgcacagcattcatatgggtctgtgactggagatcgatactatggagca |
30928748 |
T |
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| Q |
119 |
aaggctacaataaatttgtggtccccacatgtggaaggtgaaaaagaattcagcttgtctcaaatatggctcgtcactggtagaaattccaacaccattg |
218 |
Q |
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| T |
30928747 |
aaggctacaataaatttgtgggctccacatgtagaagatgaaaatgaattcagcttgtctcaaatatgggtcctcgccaatggaaatgagaacaccattg |
30928648 |
T |
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| Q |
219 |
aagctggttggcaggcatgtt |
239 |
Q |
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| T |
30928647 |
aagctggttggcaggcatgtt |
30928627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 29254329 - 29254394
Alignment:
| Q |
85 |
tgggtctgtgactggagatcgatactatggagcaaaggctacaataaatttgtggtccccacatgt |
150 |
Q |
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| T |
29254329 |
tgggtctgtgactggagatagataccatggagcacaggctaccataaatgtgtgggccccccatgt |
29254394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 241
Target Start/End: Original strand, 29254462 - 29254494
Alignment:
| Q |
209 |
aacaccattgaagctggttggcaggcatgttaa |
241 |
Q |
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| T |
29254462 |
aacaccattgaagctggttggcaggcatgttaa |
29254494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 29364704 - 29364776
Alignment:
| Q |
111 |
atggagcaaaggctacaataaatttgtggtccccacatgtggaaggtgaaaaagaattcagcttgtctcaaat |
183 |
Q |
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| T |
29364704 |
atggagcaaaggctacaataaacgtgtgggccccccaagtggaaagtccaaatgaattcagcttggctcaaat |
29364776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 243
Target Start/End: Original strand, 29234684 - 29234718
Alignment:
| Q |
209 |
aacaccattgaagctggttggcaggcatgttaaat |
243 |
Q |
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| T |
29234684 |
aacaccattgaagctggttggcaggcatgctaaat |
29234718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 29246114 - 29246207
Alignment:
| Q |
106 |
atactatggagcaaaggctacaataaatttgtggtccccacatgtggaaggtgaaaaagaattcagcttgtctcaaatatggctcgtcactggt |
199 |
Q |
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| T |
29246114 |
atactatggagcacaggctataataaacgtgtgggccccccatgttgaaagcccaaatgaattcagcttgggtcaaatatggatcgtctctggt |
29246207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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