View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0280_high_4 (Length: 410)
Name: NF0280_high_4
Description: NF0280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0280_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 28 - 399
Target Start/End: Original strand, 44373347 - 44373718
Alignment:
| Q |
28 |
caaaaacaacacaattgaaaatatcgttaacaagaacaagcatcagaagaaaatagagattaacgccattcctacctccgattaggtttagatcttccac |
127 |
Q |
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| T |
44373347 |
caaaaacaacacaattgataatatcgttaacaagaacaagcatcagaagaaaatagagattaacgccattcctacctccgattaggtttagatcttccac |
44373446 |
T |
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| Q |
128 |
tcctacttcagagccgtctagaatgcccaagcaaacatttcccatgttctggaagaaaatttgtcagcatcgacacatgaaaggtgtcagttacttgtga |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
44373447 |
tcctacttcagagccgtctagaatgcccaagcaaacatttcccatgttctggaagaaaatttgtcagcatggacacatgaaagctgtcagttacttgtga |
44373546 |
T |
|
| Q |
228 |
gtttttgatagcaataaaaaagtcaatcttgattcttgaagaaagtgattagttaggacttgactcactgatataatcaaatatgcttcaggagggattt |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44373547 |
gtttttgatagcaataaaaaagtcaatcttgattcttgaagaaagtgattagttaggacttgactcacagatataatcaaatatgcttcaggagggattt |
44373646 |
T |
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| Q |
328 |
caaattgggctttcgatcttccacttcctgggaagctaagtgcaataggcttgaagtattttttgacttcat |
399 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44373647 |
caaattgggctttcgatcttctacttcctgggaagctaagtgcaataggcttgaagtattttttgacttcat |
44373718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 155 - 302
Target Start/End: Complemental strand, 23961207 - 23961058
Alignment:
| Q |
155 |
caagcaaacatttcccatgttctggaagaa-aatttgtcagcatcgacacatgaaaggtgtcagttacttgtgagtttttgatagcaataaaaaagtcaa |
253 |
Q |
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||||||||||||| ||||| |||||||| |||| |||||||| ||||||||||||| |||||||||||||||||| |||||| |||||||| || || |
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| T |
23961207 |
caagcaaacattttaaatgttttggaagaacaattcatcagcatccacacatgaaaggtatcagttacttgtgagtttctgatagaaataaaaaggttaa |
23961108 |
T |
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| Q |
254 |
tcttg-attcttgaagaaagtgattagttaggacttgactcactgatata |
302 |
Q |
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||||| ||||||||| ||| ||||||||||||||| |||| || ||||| |
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| T |
23961107 |
tcttgaattcttgaaaaaacggattagttaggactttactcgctaatata |
23961058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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