View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0280_high_5 (Length: 318)
Name: NF0280_high_5
Description: NF0280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0280_high_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 33 - 318
Target Start/End: Complemental strand, 44373938 - 44373653
Alignment:
| Q |
33 |
tcatcatacaatatctgaattgtttgaagaagaagaaaaataaaaataattactactttgctaatacgagaaaatatcgactcattgcttaacattgcta |
132 |
Q |
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| T |
44373938 |
tcatcatacaatatctgaattgtttgaagaagaagaaaaataaaaataattactactttgctaatacgagaaaatattgactcattgcttaacattgcta |
44373839 |
T |
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| Q |
133 |
ttccgttctatttccatatgcagttgacgaaggaattagctggaaagcccataaaagaagcacctgaagaccaaactctccctctgtgttggtatggaaa |
232 |
Q |
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| T |
44373838 |
ttccgttctatttccatatgcagttgacgaaggaattagctggaaagcccataaaagaagcacctgaagaccaaactcttcctctgtgttggtatggaaa |
44373739 |
T |
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| Q |
233 |
aagaccttttagaagtgtatatgaagtcaaaaaatacttcaagcctattgcacttagcttcccaggaagtggaacatcgaaagccc |
318 |
Q |
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| T |
44373738 |
aagaccttttagaagtgtatatgaagtcaaaaaatacttcaagcctattgcacttagcttcccaggaagtagaagatcgaaagccc |
44373653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 277
Target Start/End: Complemental strand, 39496426 - 39496311
Alignment:
| Q |
162 |
aaggaattagctggaaagcccataaaagaagcacctgaagaccaaactctccctctgtgttggtatggaaaaagaccttttagaagtgtatatgaagtca |
261 |
Q |
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||||||||| | ||||||| ||||||| ||||||||| ||||| ||| | ||| |||| ||| |||| ||||||||||| ||||| || ||||||| | |
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| T |
39496426 |
aaggaattacatagaaagccaataaaagcagcacctgatgaccagactttacctatgtgctggcatggtaaaagacctttcagaagcataaatgaagtga |
39496327 |
T |
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| Q |
262 |
aaaaatacttcaagcc |
277 |
Q |
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| T |
39496326 |
agaaatacttcaagcc |
39496311 |
T |
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