View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0280_high_6 (Length: 307)
Name: NF0280_high_6
Description: NF0280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0280_high_6 |
 | |
|
| [»] scaffold0330 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 89 - 266
Target Start/End: Original strand, 9388963 - 9389140
Alignment:
| Q |
89 |
ttaaaatcaagcgtcattaaatcaatcacagtttttcaaacatttctatttgccatactgtttgttttcagataaatcttgcaaaatcatcaccgaaatg |
188 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9388963 |
ttaaaatcaagtgtcattaaatcaatcacagtttttcaaacatttctatttgccatactgtttgttttcagataaatcttgcaaaatcatcaccgaaatg |
9389062 |
T |
|
| Q |
189 |
tgaatattaaatcattataaataatgtcatcagttgtactaacattcattcatacaattccagggcttgaatattctt |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9389063 |
tgaatattaaatcattataaataatgtcatcagttgtacaaacattcattcatacaattccagggcttgaatattctt |
9389140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 19810430 - 19810358
Alignment:
| Q |
187 |
tgtgaatattaaatcattataaataatgtcatcagttgtactaacattcattcatacaattccagggcttgaa |
259 |
Q |
| |
|
||||||| |||| |||||||||||||| |||||| |||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
19810430 |
tgtgaatcttaagtcattataaataatatcatcaattgtacaaacattcaatcatacaattccagggcctgaa |
19810358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 162 - 266
Target Start/End: Original strand, 31938680 - 31938784
Alignment:
| Q |
162 |
aaatcttgcaaaatcatcaccgaaatgtgaatattaaatcattataaataatgtcatcagttgtactaacattcattcatacaattccagggcttgaata |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||| ||| |||||| |
|
|
| T |
31938680 |
aaatcttgcaaaatcatcaccgaaatgtgaatattaaatcatgatcaataatgtcatcagctgtacgaacattcattcatacaattccatggcctgaata |
31938779 |
T |
|
| Q |
262 |
ttctt |
266 |
Q |
| |
|
||||| |
|
|
| T |
31938780 |
ttctt |
31938784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 13534969 - 13535049
Alignment:
| Q |
170 |
caaaatcatcaccgaaatgtgaatattaaatcattataaataatgtcatcagttgtactaacattcattcatacaattcca |
250 |
Q |
| |
|
||||||||||||| || ||||||| ||||||||||||||||||||||||| |||||| |||||||| ||||||||||||| |
|
|
| T |
13534969 |
caaaatcatcaccaaagtgtgaatcataaatcattataaataatgtcatcaattgtacaaacattcaatcatacaattcca |
13535049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 263
Target Start/End: Original strand, 32671548 - 32671582
Alignment:
| Q |
229 |
aacattcattcatacaattccagggcttgaatatt |
263 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
32671548 |
aacattcattcatacaattccagggcctgaatatt |
32671582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 5638938 - 5638983
Alignment:
| Q |
151 |
tgttttcagataaatcttgcaaaatcatcaccgaaatgtgaatatt |
196 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5638938 |
tgttttcaaataaatcttgcaaaatcatcaccgaagtgtgaatatt |
5638983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 1336890 - 1336938
Alignment:
| Q |
215 |
tcatcagttgtactaacattcattcatacaattccagggcttgaatatt |
263 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| | |||||||| |
|
|
| T |
1336890 |
tcatcagttgtaggaacattcattcatacaattccaggccctgaatatt |
1336938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0330 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0330
Description:
Target: scaffold0330; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 266
Target Start/End: Complemental strand, 10130 - 10051
Alignment:
| Q |
189 |
tgaatattaaatcattataaataatgtcatcagttgtactaacattcattc--atacaattccagggcttgaatattctt |
266 |
Q |
| |
|
||||| |||||| |||||||| |||||||||| || | | | ||||||||| ||||||||||||||| |||||| |||| |
|
|
| T |
10130 |
tgaatcttaaattattataaacaatgtcatcaattttgcaaccattcattcatatacaattccagggcctgaatactctt |
10051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1048 times since January 2019
Visitors: 2571