View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0280_high_8 (Length: 258)
Name: NF0280_high_8
Description: NF0280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0280_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 9e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 37 - 247
Target Start/End: Complemental strand, 26717491 - 26717270
Alignment:
| Q |
37 |
ctttaaaccaaaatagacattgatcattcaacaataaggggaaaaaagcacataaaagaaagaggaataaaggactaatagtaatatagtacactatcat |
136 |
Q |
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| T |
26717491 |
ctttaaaccaaaatagatattgatcattcaacaataaggggaaaaaagcacttaaaagaaagaggaataaaggactaatagtaatatagtacactatcat |
26717392 |
T |
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| Q |
137 |
tatttctc------------tatatgcacctttaacctttcatctattttcaacctttctccttaacctcctattcgttcttttcccttctaatttggtg |
224 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26717391 |
tatttctcttatattcatattatatgcacctttaacctttcatctattttcaa-ctttctccttaacctcctattcattcttttcccttctaatttggtg |
26717293 |
T |
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| Q |
225 |
ataattttatagaataatctacc |
247 |
Q |
| |
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|||||||||||||| ||| |||| |
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| T |
26717292 |
ataattttatagaacaatttacc |
26717270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 26614384 - 26614310
Alignment:
| Q |
145 |
tatatgcacctttaacctttcatctattttcaacctttctccttaacctcctattcgttcttttcccttctaattt |
220 |
Q |
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||||||||||||||| |||||||||| |||| ||||| ||||||||||| ||| | |||||||| |||| ||||| |
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| T |
26614384 |
tatatgcacctttaaactttcatctactttc-accttaatccttaacctcttatacattcttttcacttccaattt |
26614310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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