View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0280_low_2 (Length: 435)
Name: NF0280_low_2
Description: NF0280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0280_low_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 11 - 435
Target Start/End: Complemental strand, 44374068 - 44373653
Alignment:
| Q |
11 |
ttatacttacttcaactctaatgcttatcaagcactaatttcttgggtcagttgaaagcaattttcacaaaatcctggaatttcaagcatttcaaaattc |
110 |
Q |
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| T |
44374068 |
ttatacttacttcaactctaatgcttatcaagcactaatttcttgggtcagttgaaagcaattttcacaatatcctggaatttcaagcatttcaaaattc |
44373969 |
T |
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| Q |
111 |
ataaggcattaccacaagactatgtcaatgagatggacatcatcatacaatatctgaattgtttgaagaagaagaaaaataaaaataattactactttgc |
210 |
Q |
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| T |
44373968 |
ataaggcattaccacaagactatgtcaatg---------tcatcatacaatatctgaattgtttgaagaagaagaaaaataaaaataattactactttgc |
44373878 |
T |
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| Q |
211 |
taatacgagaaaatatcgactcattgcttaacattgctattccgttctatttccatatgcagttgacgaaggaattagctggaaagcccataaaagaagc |
310 |
Q |
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| T |
44373877 |
taatacgagaaaatattgactcattgcttaacattgctattccgttctatttccatatgcagttgacgaaggaattagctggaaagcccataaaagaagc |
44373778 |
T |
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| Q |
311 |
acctgaagaccaaactctccctctgtgttggtatggaaaaagaccttttagaagtgtatatgaagtcaaaaaatacttcaagcctattgcacttagcttc |
410 |
Q |
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| T |
44373777 |
acctgaagaccaaactcttcctctgtgttggtatggaaaaagaccttttagaagtgtatatgaagtcaaaaaatacttcaagcctattgcacttagcttc |
44373678 |
T |
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| Q |
411 |
ccaggaagtggaacatcgaaagccc |
435 |
Q |
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| T |
44373677 |
ccaggaagtagaagatcgaaagccc |
44373653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 394
Target Start/End: Complemental strand, 39496426 - 39496311
Alignment:
| Q |
279 |
aaggaattagctggaaagcccataaaagaagcacctgaagaccaaactctccctctgtgttggtatggaaaaagaccttttagaagtgtatatgaagtca |
378 |
Q |
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||||||||| | ||||||| ||||||| ||||||||| ||||| ||| | ||| |||| ||| |||| ||||||||||| ||||| || ||||||| | |
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| T |
39496426 |
aaggaattacatagaaagccaataaaagcagcacctgatgaccagactttacctatgtgctggcatggtaaaagacctttcagaagcataaatgaagtga |
39496327 |
T |
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| Q |
379 |
aaaaatacttcaagcc |
394 |
Q |
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| T |
39496326 |
agaaatacttcaagcc |
39496311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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