View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0280_low_3 (Length: 429)
Name: NF0280_low_3
Description: NF0280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0280_low_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 11 - 429
Target Start/End: Complemental strand, 44374068 - 44373653
Alignment:
| Q |
11 |
ttatacttacttcaactctaatgcttatcaagcactaatttcttgggtcagttgaaagcaattttcacaaaatcctggaatttcaagcatttcaaaattc |
110 |
Q |
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| T |
44374068 |
ttatacttacttcaactctaatgcttatcaagcactaatttcttgggtcagttgaaagcaattttcacaatatcctggaatttcaagcatttcaaaattc |
44373969 |
T |
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| Q |
111 |
ataaggcattaccacaagactatgtcaatgtcatcatcatacaatatctgaattgtttgaagaagaagaaaaataaaaataattactactttgctaatac |
210 |
Q |
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| T |
44373968 |
ataaggcattaccacaagactatgtcaatgtcatcat---acaatatctgaattgtttgaagaagaagaaaaataaaaataattactactttgctaatac |
44373872 |
T |
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| Q |
211 |
gagaaaatatcgactcattgcttaacattgctattccgttctatttccatatgcagttgacgaaggaattagctggaaagcccataaaagaagcacctga |
310 |
Q |
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| T |
44373871 |
gagaaaatattgactcattgcttaacattgctattccgttctatttccatatgcagttgacgaaggaattagctggaaagcccataaaagaagcacctga |
44373772 |
T |
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| Q |
311 |
agaccaaactctccctctgtgttggtatggaaaaagaccttttagaagtgtatatgaagtcaaaaaatacttcaagcctattgcacttagcttcccagga |
410 |
Q |
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| T |
44373771 |
agaccaaactcttcctctgtgttggtatggaaaaagaccttttagaagtgtatatgaagtcaaaaaatacttcaagcctattgcacttagcttcccagga |
44373672 |
T |
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| Q |
411 |
agtggaacatcgaaagccc |
429 |
Q |
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| T |
44373671 |
agtagaagatcgaaagccc |
44373653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 388
Target Start/End: Complemental strand, 39496426 - 39496311
Alignment:
| Q |
273 |
aaggaattagctggaaagcccataaaagaagcacctgaagaccaaactctccctctgtgttggtatggaaaaagaccttttagaagtgtatatgaagtca |
372 |
Q |
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||||||||| | ||||||| ||||||| ||||||||| ||||| ||| | ||| |||| ||| |||| ||||||||||| ||||| || ||||||| | |
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| T |
39496426 |
aaggaattacatagaaagccaataaaagcagcacctgatgaccagactttacctatgtgctggcatggtaaaagacctttcagaagcataaatgaagtga |
39496327 |
T |
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| Q |
373 |
aaaaatacttcaagcc |
388 |
Q |
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| T |
39496326 |
agaaatacttcaagcc |
39496311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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