View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0280_low_7 (Length: 307)
Name: NF0280_low_7
Description: NF0280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0280_low_7
[» ] scaffold0330 (1 HSPs)
Alignment Details
Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 89 - 266
Target Start/End: Original strand, 9388963 - 9389140
Alignment:
Q
89
ttaaaatcaagcgtcattaaatcaatcacagtttttcaaacatttctatttgccatactgtttgttttcagataaatcttgcaaaatcatcaccgaaatg
188
Q
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
9388963
ttaaaatcaagtgtcattaaatcaatcacagtttttcaaacatttctatttgccatactgtttgttttcagataaatcttgcaaaatcatcaccgaaatg
9389062
T
Q
189
tgaatattaaatcattataaataatgtcatcagttgtactaacattcattcatacaattccagggcttgaatattctt
266
Q
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
T
9389063
tgaatattaaatcattataaataatgtcatcagttgtacaaacattcattcatacaattccagggcttgaatattctt
9389140
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 19810430 - 19810358
Alignment:
Q
187
tgtgaatattaaatcattataaataatgtcatcagttgtactaacattcattcatacaattccagggcttgaa
259
Q
||||||| |||| |||||||||||||| |||||| |||||| |||||||| ||||||||||||||||| ||||
T
19810430
tgtgaatcttaagtcattataaataatatcatcaattgtacaaacattcaatcatacaattccagggcctgaa
19810358
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 162 - 266
Target Start/End: Original strand, 31938680 - 31938784
Alignment:
Q
162
aaatcttgcaaaatcatcaccgaaatgtgaatattaaatcattataaataatgtcatcagttgtactaacattcattcatacaattccagggcttgaata
261
Q
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||| ||| ||||||
T
31938680
aaatcttgcaaaatcatcaccgaaatgtgaatattaaatcatgatcaataatgtcatcagctgtacgaacattcattcatacaattccatggcctgaata
31938779
T
Q
262
ttctt
266
Q
|||||
T
31938780
ttctt
31938784
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 13534969 - 13535049
Alignment:
Q
170
caaaatcatcaccgaaatgtgaatattaaatcattataaataatgtcatcagttgtactaacattcattcatacaattcca
250
Q
||||||||||||| || ||||||| ||||||||||||||||||||||||| |||||| |||||||| |||||||||||||
T
13534969
caaaatcatcaccaaagtgtgaatcataaatcattataaataatgtcatcaattgtacaaacattcaatcatacaattcca
13535049
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 263
Target Start/End: Original strand, 32671548 - 32671582
Alignment:
Q
229
aacattcattcatacaattccagggcttgaatatt
263
Q
|||||||||||||||||||||||||| ||||||||
T
32671548
aacattcattcatacaattccagggcctgaatatt
32671582
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 5638938 - 5638983
Alignment:
Q
151
tgttttcagataaatcttgcaaaatcatcaccgaaatgtgaatatt
196
Q
|||||||| |||||||||||||||||||||||||| ||||||||||
T
5638938
tgttttcaaataaatcttgcaaaatcatcaccgaagtgtgaatatt
5638983
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 1336890 - 1336938
Alignment:
Q
215
tcatcagttgtactaacattcattcatacaattccagggcttgaatatt
263
Q
|||||||||||| |||||||||||||||||||||||| | ||||||||
T
1336890
tcatcagttgtaggaacattcattcatacaattccaggccctgaatatt
1336938
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: scaffold0330 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0330
Description:
Target: scaffold0330; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 266
Target Start/End: Complemental strand, 10130 - 10051
Alignment:
Q
189
tgaatattaaatcattataaataatgtcatcagttgtactaacattcattc--atacaattccagggcttgaatattctt
266
Q
||||| |||||| |||||||| |||||||||| || | | | ||||||||| ||||||||||||||| |||||| ||||
T
10130
tgaatcttaaattattataaacaatgtcatcaattttgcaaccattcattcatatacaattccagggcctgaatactctt
10051
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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