View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0282_low_11 (Length: 249)

Name: NF0282_low_11
Description: NF0282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0282_low_11
NF0282_low_11
[»] chr3 (1 HSPs)
chr3 (7-115)||(43490135-43490243)
[»] chr8 (2 HSPs)
chr8 (13-88)||(38653217-38653292)
chr8 (25-71)||(41747949-41747995)
[»] chr1 (1 HSPs)
chr1 (7-83)||(44331845-44331921)
[»] chr6 (1 HSPs)
chr6 (12-78)||(13409874-13409940)
[»] chr7 (2 HSPs)
chr7 (37-74)||(6568891-6568928)
chr7 (37-74)||(6583050-6583087)
[»] chr5 (1 HSPs)
chr5 (25-80)||(2361310-2361365)
[»] chr4 (2 HSPs)
chr4 (31-74)||(33718963-33719006)
chr4 (31-77)||(33720979-33721025)
[»] chr2 (1 HSPs)
chr2 (21-74)||(4068217-4068270)


Alignment Details
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 43490135 - 43490243
Alignment:
Q  7 cttgctgctttgaatggatctcttatctctgctgcccattttccccatggtctctgtcttactcctctgtattttctctttgcttctccttctcttacta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43490135 cttgctgctttgaatggatctcttatctctgctgcccattttccccatggtctctgtcttactcctctgtattttctctttgcttctccttctcttacta 43490234  T
Q  107 cattctctg 115  Q
    |||||||||    
T  43490235 cattctctg 43490243  T

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Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 38653217 - 38653292
Alignment:
Q  13 gctttgaatggatctcttatctctgctgcccattttccccatggtctctgtcttactcctctgtattttctctttg 88  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  38653217 gctttgaaaggatctcttatctctgctgcccattttccccatggcctctgtcttactcctctgtattttctttttg 38653292  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 41747995 - 41747949
Alignment:
Q  25 tctcttatctctgctgcccattttccccatggtctctgtcttactcc 71  Q
    ||||||||||| || |||||||||||||| ||||||||||| |||||    
T  41747995 tctcttatctccgccgcccattttccccaaggtctctgtctcactcc 41747949  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 44331845 - 44331921
Alignment:
Q  7 cttgctgctttgaatggatctcttatctctgctgcccattttccccatggtctctgtcttactcctctgtattttct 83  Q
    ||||||||||||  ||||||||  || ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44331845 cttgctgctttgtgtggatctcgaatttctgctgcccattttccccatggtctctgtcttactcctctgtatcttct 44331921  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 13409940 - 13409874
Alignment:
Q  12 tgctttgaatggatctcttatctctgctgcccattttccccatggtctctgtcttactcctctgtat 78  Q
    |||||||  |||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||    
T  13409940 tgctttgtgtggatctcttatttctgctgcccattttccccatggtctttgtctcactcctctgtat 13409874  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 6568928 - 6568891
Alignment:
Q  37 gctgcccattttccccatggtctctgtcttactcctct 74  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  6568928 gctgcccattttccccatggtctctgtctcactcctct 6568891  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 6583087 - 6583050
Alignment:
Q  37 gctgcccattttccccatggtctctgtcttactcctct 74  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  6583087 gctgcccattttccccatggtctttgtctcactcctct 6583050  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 2361310 - 2361365
Alignment:
Q  25 tctcttatctctgctgcccattttccccatggtctctgtcttactcctctgtattt 80  Q
    ||||||||||| || ||||||||||||||||||||||| || ||||| | ||||||    
T  2361310 tctcttatctccgccgcccattttccccatggtctctgcctcactccacggtattt 2361365  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 33719006 - 33718963
Alignment:
Q  31 atctctgctgcccattttccccatggtctctgtcttactcctct 74  Q
    ||||| || |||||||||||||||||||||||||| ||||||||    
T  33719006 atctcagcagcccattttccccatggtctctgtctcactcctct 33718963  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 33721025 - 33720979
Alignment:
Q  31 atctctgctgcccattttccccatggtctctgtcttactcctctgta 77  Q
    ||||| || ||||||||||||||||||||||| || |||||||||||    
T  33721025 atctcagcagcccattttccccatggtctctgcctcactcctctgta 33720979  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 4068217 - 4068270
Alignment:
Q  21 tggatctcttatctctgctgcccattttccccatggtctctgtcttactcctct 74  Q
    ||||||||||||||| || ||  || ||||||||||||||| ||||||||||||    
T  4068217 tggatctcttatctccgcggcgtatcttccccatggtctctttcttactcctct 4068270  T

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