View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0282_low_16 (Length: 217)
Name: NF0282_low_16
Description: NF0282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0282_low_16 |
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| [»] scaffold0470 (1 HSPs) |
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Alignment Details
Target: scaffold0470 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 23 - 197
Target Start/End: Original strand, 2280 - 2454
Alignment:
| Q |
23 |
acttttcactaccacaaaacataaaacccgatcacgtacaattaagtgtgtatttaaatttatccgcctaagtttagctaagttgatatgtacaatacat |
122 |
Q |
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| T |
2280 |
acttttcactaccacaaaacataaaacactatcacgtacaattaagtgtgtatttaaatttatcctcctaagtttaactaagttgatatgtataatacat |
2379 |
T |
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| Q |
123 |
aatgcataatatgtaaggtaaattnnnnnnnntcacggacataaacaaaacgattttgattccaaaccactcact |
197 |
Q |
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| T |
2380 |
atgacataatatgtagggtaaattaaaaaaaatcacggactttatcaaaaccattttgattccaaaccactcact |
2454 |
T |
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Target: chr8 (Bit Score: 99; Significance: 5e-49; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 23 - 197
Target Start/End: Original strand, 6612992 - 6613166
Alignment:
| Q |
23 |
acttttcactaccacaaaacataaaacccgatcacgtacaattaagtgtgtatttaaatttatccgcctaagtttagctaagttgatatgtacaatacat |
122 |
Q |
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| T |
6612992 |
acttttcactaccacaaaacataaaacactatcacgtacaattaagtgtgtatttaaatttatcctcctaagtttaactaagttgatatgtataatacat |
6613091 |
T |
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| Q |
123 |
aatgcataatatgtaaggtaaattnnnnnnnntcacggacataaacaaaacgattttgattccaaaccactcact |
197 |
Q |
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| T |
6613092 |
atgacataatatgtagggtaaattaaaaaaaatcacggactttatcaaaaccattttgattccaaaccactcact |
6613166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 6582371 - 6582429
Alignment:
| Q |
26 |
tttcactaccacaaaacataaaacccgatcacgtacaattaagtgtgtatttaaattta |
84 |
Q |
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| T |
6582371 |
tttcactaccacaaaacctaaaacactatcccgtaaaattaaatgtgtatttaaattta |
6582429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 6660629 - 6660687
Alignment:
| Q |
26 |
tttcactaccacaaaacataaaacccgatcacgtacaattaagtgtgtatttaaattta |
84 |
Q |
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||||||||||||||||| |||||| | ||| |||| |||||||| |||||||||||||| |
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| T |
6660629 |
tttcactaccacaaaacctaaaacactatcccgtataattaagtatgtatttaaattta |
6660687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 6741031 - 6741089
Alignment:
| Q |
26 |
tttcactaccacaaaacataaaacccgatcacgtacaattaagtgtgtatttaaattta |
84 |
Q |
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| T |
6741031 |
tttcactaccacaaaacctaaaacactatcccgtataattaagtatgtatttaaattta |
6741089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 6758546 - 6758604
Alignment:
| Q |
26 |
tttcactaccacaaaacataaaacccgatcacgtacaattaagtgtgtatttaaattta |
84 |
Q |
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| T |
6758546 |
tttcactaccgtaaaacctaaaacactatcccgtataattaagtgtgtatttaaattta |
6758604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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