View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0282_low_17 (Length: 201)
Name: NF0282_low_17
Description: NF0282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0282_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 122; Significance: 8e-63; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 8e-63
Query Start/End: Original strand, 15 - 171
Target Start/End: Original strand, 22996592 - 22996749
Alignment:
| Q |
15 |
tgagtcatcatctgaataagttatttgaatttttagcatataggacagtacactagcgagtttatattcatcattaactcctctcacatcagatttattt |
114 |
Q |
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| T |
22996592 |
tgagtcatcatctatataagttatttggatttttagcatataggacagtacactagcgagtttatattcattattaactcctctcacatcagatttattt |
22996691 |
T |
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| Q |
115 |
catattgttaataacttttgctttgttatgttgataaaatgactag-atttactcttt |
171 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22996692 |
tgtaatgttaataacttttgctttgttatgttgataaaatgactagaatttactcttt |
22996749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 75 - 193
Target Start/End: Original strand, 923980 - 924098
Alignment:
| Q |
75 |
tttatattcatcattaactcctctcacatcagatttatttcatattgttaataacttttgctttgttatgttgataaaatgactagatttactctttaac |
174 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
923980 |
tttatattcatcattaactcctctcacatcagatttatttcatattgttaataacttttgctttgttatgttgataaaatgactggatttactctttaac |
924079 |
T |
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| Q |
175 |
ctaattctttgcctatgat |
193 |
Q |
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||||||||||||||||||| |
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| T |
924080 |
ctaattctttgcctatgat |
924098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 43 - 190
Target Start/End: Complemental strand, 22964946 - 22964799
Alignment:
| Q |
43 |
atttttagcatataggacagtacactagcgagtttatattcatcattaactcctctcacatcagatttatttcatattgttaataacttttgctttgtta |
142 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||| || |||||||||| |||||||||||| |
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| T |
22964946 |
atttttagcatataggacagtacactagcgagtttatattcattattaactcctctcatatcaaatttatttcgtaatgttaataac-tttgctttgtta |
22964848 |
T |
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| Q |
143 |
tgttgataaaatgactag-atttactctttaacctaattctttgcctat |
190 |
Q |
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|||||||||||| ||||| || |||||||| || ||||||||||||| |
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| T |
22964847 |
tgttgataaaataactagaatatactcttttgactgattctttgcctat |
22964799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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