View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0282_low_4 (Length: 501)
Name: NF0282_low_4
Description: NF0282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0282_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 254 - 399
Target Start/End: Original strand, 34120766 - 34120911
Alignment:
| Q |
254 |
atattatatgatgagttgatacacatgggctgaaagagtcatggctgatgatgagtctataagccactcaattgttttaccaatgggaccctttcatatt |
353 |
Q |
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| T |
34120766 |
atattatatgatgagttgatacacatgggctgaaagagtcatggctgatgatgagtctataagccactcaattgttttaccaatgggaccctttcatatt |
34120865 |
T |
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| Q |
354 |
gatgatagcaagaaattcacaacattatgatccatcataaacatta |
399 |
Q |
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| T |
34120866 |
gatgatagcaagaaattcacaacattatgatccatcataaacatta |
34120911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 48 - 190
Target Start/End: Original strand, 34120563 - 34120705
Alignment:
| Q |
48 |
attttatatatacggttgaatttggtttagttcggtttcaaggaataatcaaaaatctaatacaatcgtagtgannnnnnnatcaaacatatccactata |
147 |
Q |
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| T |
34120563 |
attttatatatacggttgaatttggtttagttcggtttcaaagaataatcagaaatctaatacaattgtagtgatttttttatcaaacatatccactata |
34120662 |
T |
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| Q |
148 |
tactagctttatgctgtttttcaataacatttttttaattctt |
190 |
Q |
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| T |
34120663 |
tactagctttatgctgtttttcaataacatttttttaattctt |
34120705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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