View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0282_low_5 (Length: 433)
Name: NF0282_low_5
Description: NF0282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0282_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 30 - 418
Target Start/End: Complemental strand, 12219942 - 12219554
Alignment:
| Q |
30 |
acatcaaccattttaccaaacccttccatatctcctggtttttgccaaagcttacttttctcttccattgaaagattgaaaagttctcgagcacctatct |
129 |
Q |
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| T |
12219942 |
acatcaaccattttaccaaacccttccatatctcctggtttttgccaaagcttactcttctcttccattgaaagattgaaaagttctcgagcacctatct |
12219843 |
T |
|
| Q |
130 |
tcacatcttccagcatttccatgctatgtccgtgattaattagctgttacacataaccacaatttttatagagttacattactctatgtttggtgcagta |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12219842 |
tcacatcttccagcatttccatgctatgtccgtgattaattagctgttacacataaccacaatttttatagagttacattactctatgtttggtgcagta |
12219743 |
T |
|
| Q |
230 |
aatataatacacaattttatttcattcatttgtatttatagtcactcaatcatataaccatttgatctttaaaatacatacacttttcatcatatagtca |
329 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
12219742 |
aatataatacacaattatatttcattcatttgtatttatagtcactcaatcatataaccatttgatctttgaaatacatgtacttttcatcatatagtca |
12219643 |
T |
|
| Q |
330 |
tacaaattgatagtttatatataactgaattgcaatctgaaaagttttacattgaccttatatcaaaattattctcttaattttagtct |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12219642 |
tacaaattgatagtttatatataactgaattgcaatctgaaaagttttacattgaccttatatcaaaattattctcttaattttagtct |
12219554 |
T |
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