View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0282_low_6 (Length: 427)
Name: NF0282_low_6
Description: NF0282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0282_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 94 - 418
Target Start/End: Complemental strand, 9910282 - 9909958
Alignment:
| Q |
94 |
atcaataactatgggtcatacctcacaatctccactttagtgaatattcaaacgacgatcctatttacaagtttaccgttgagcaatactcaacaatttc |
193 |
Q |
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| T |
9910282 |
atcaataactatgagtcatacctaacaatctccactttagtgaatattcaaacgacgatccaatttacaagtttaccgttgagccatactcaacaatttc |
9910183 |
T |
|
| Q |
194 |
cacccgaccaacatgcccattcatcaataactatgagtcatacctaacaatctcgactttaatgttaattttgtcttttctttctatttttaattgctta |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9910182 |
cacccgaccaacatgcccattcatcaataactatgagtcatacctaacaatctcgactttaatgttaattttgtcttttctttctatttttaattgctta |
9910083 |
T |
|
| Q |
294 |
acttctgagacatgggtcagcatgacccaaactttatttagtgatcaaagtgaaattgttgttatttgcataataagtttaaaagagaaaagtaccttgt |
393 |
Q |
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||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9910082 |
acttcagagacacaggtcagcatgacccaaactttatttagtgatcaaagtgaaattgttgttatttgcataataagtttaaaagagaaaagtaccttgt |
9909983 |
T |
|
| Q |
394 |
ggccaatcttgagcaaaagaataat |
418 |
Q |
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||||||||||||||||||||||||| |
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| T |
9909982 |
ggccaatcttgagcaaaagaataat |
9909958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 145 - 254
Target Start/End: Complemental strand, 9910353 - 9910244
Alignment:
| Q |
145 |
acgacgatcctatttacaagtttaccgttgagcaatactcaacaatttccacccgaccaacatgcccattcatcaataactatgagtcatacctaacaat |
244 |
Q |
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|||||||||||||||| || ||||||||||||| ||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9910353 |
acgacgatcctatttaaaattttaccgttgagccatacttaacaatttccacccgagcaacatgcccatttatcaataactatgagtcatacctaacaat |
9910254 |
T |
|
| Q |
245 |
ctcgacttta |
254 |
Q |
| |
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||| |||||| |
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| T |
9910253 |
ctccacttta |
9910244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 296
Target Start/End: Original strand, 42498947 - 42498992
Alignment:
| Q |
251 |
tttaatgttaattttgtcttttctttctatttttaattgcttaact |
296 |
Q |
| |
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|||||| |||| |||||| |||||||| |||||||||||||||||| |
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| T |
42498947 |
tttaatattaactttgtcatttctttccatttttaattgcttaact |
42498992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 9910162 - 9910122
Alignment:
| Q |
92 |
tcatcaataactatgggtcatacctcacaatctccacttta |
132 |
Q |
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||||||||||||||| ||||||||| |||||||| |||||| |
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| T |
9910162 |
tcatcaataactatgagtcatacctaacaatctcgacttta |
9910122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 294
Target Start/End: Complemental strand, 30917075 - 30917032
Alignment:
| Q |
251 |
tttaatgttaattttgtcttttctttctatttttaattgcttaa |
294 |
Q |
| |
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|||||||||||||||||| |||||||||||||||| ||| |||| |
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| T |
30917075 |
tttaatgttaattttgtcatttctttctatttttagttgtttaa |
30917032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 296
Target Start/End: Original strand, 51347186 - 51347231
Alignment:
| Q |
251 |
tttaatgttaattttgtcttttctttctatttttaattgcttaact |
296 |
Q |
| |
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|||||||||||||| ||||||||||| ||||||||| || |||||| |
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| T |
51347186 |
tttaatgttaatttggtcttttctttttatttttaactgtttaact |
51347231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 296
Target Start/End: Original strand, 6599582 - 6599627
Alignment:
| Q |
251 |
tttaatgttaattttgtcttttctttctatttttaattgcttaact |
296 |
Q |
| |
|
||||||||||| |||||| ||||||| |||||||| |||||||||| |
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|
| T |
6599582 |
tttaatgttaactttgtcctttctttatatttttatttgcttaact |
6599627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 296
Target Start/End: Original strand, 6675035 - 6675080
Alignment:
| Q |
251 |
tttaatgttaattttgtcttttctttctatttttaattgcttaact |
296 |
Q |
| |
|
||||||||||| |||||| ||||||| |||||||| |||||||||| |
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|
| T |
6675035 |
tttaatgttaactttgtcctttctttatatttttatttgcttaact |
6675080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 296
Target Start/End: Original strand, 23991777 - 23991810
Alignment:
| Q |
263 |
tttgtcttttctttctatttttaattgcttaact |
296 |
Q |
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|||||||||||||| ||||||||||||||||||| |
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| T |
23991777 |
tttgtcttttctttgtatttttaattgcttaact |
23991810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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