View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0283_low_1 (Length: 583)

Name: NF0283_low_1
Description: NF0283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0283_low_1
NF0283_low_1
[»] chr3 (2 HSPs)
chr3 (328-571)||(13227794-13228037)
chr3 (328-452)||(53883670-53883788)
[»] chr7 (1 HSPs)
chr7 (356-571)||(47522608-47522823)
[»] chr4 (1 HSPs)
chr4 (328-544)||(42680126-42680336)
[»] chr2 (2 HSPs)
chr2 (158-317)||(3467492-3467637)
chr2 (35-119)||(37978964-37979048)
[»] chr5 (1 HSPs)
chr5 (423-544)||(35934647-35934768)
[»] scaffold0002 (1 HSPs)
scaffold0002 (328-384)||(192007-192063)


Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 328 - 571
Target Start/End: Original strand, 13227794 - 13228037
Alignment:
Q  328 atggcagaggcaaatagagcttctgcacattttcgttaatccatgagcaggatctatatacacacatagacctatgtatggatccatacataattataat 427  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13227794 atggcagaggcaaatagagcttttgcacattttcgttaatccatgagcagggtctatatacacacatagacctatgtatggatccatacataattataat 13227893  T
Q  428 tggaaaagaatcaatagaaaaagaatcggaattaatcgatatatctatcgaaacgaaagacgaaatagaaatgatggctcaactaagcacttttggagac 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||    
T  13227894 tggaaaagaatcaatagaaaaagaatcggaattaatcgatatatctatcgaaacgaaagacgaaatagaaatgatggctcaactaaggactttttgggac 13227993  T
Q  528 ttgcttaagaataaatataaataacgaggaatgtttggtatttt 571  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  13227994 ttgcttaagaataaatataaataacgaggaatgtttggtatttt 13228037  T

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Target: chr3; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 328 - 452
Target Start/End: Complemental strand, 53883788 - 53883670
Alignment:
Q  328 atggcagaggcaaatagagcttctgcacattttcgttaatccatgagcaggatctatatacacacatagacctatgtatggatccatacataattataat 427  Q
    |||||||||||||||||| ||| ||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||| |      |||||    
T  53883788 atggcagaggcaaatagatcttttgcacattttcattaatcaatgagcaggatctatacacacacatagacctatgtatggatccatcc------ataat 53883695  T
Q  428 tggaaaagaatcaatagaaaaagaa 452  Q
    |||||||||||||||||||||||||    
T  53883694 tggaaaagaatcaatagaaaaagaa 53883670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 188; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 356 - 571
Target Start/End: Original strand, 47522608 - 47522823
Alignment:
Q  356 attttcgttaatccatgagcaggatctatatacacacatagacctatgtatggatccatacataattataattggaaaagaatcaatagaaaaagaatcg 455  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  47522608 attttcgttaatccatgagtaggatctatgtacacacatagacctatgtatggatccatacataattataattggaaaagaatcgatagaaaaagaatcg 47522707  T
Q  456 gaattaatcgatatatctatcgaaacgaaagacgaaatagaaatgatggctcaactaagcacttttggagacttgcttaagaataaatataaataacgag 555  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||    
T  47522708 gaattaatcgatatatttatcgaaacgaaagacgaaatagaaatgatggctcaactaaacacttttggggacttgcttaagaataaatataaataaccag 47522807  T
Q  556 gaatgtttggtatttt 571  Q
    ||||||||||||||||    
T  47522808 gaatgtttggtatttt 47522823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 328 - 544
Target Start/End: Original strand, 42680126 - 42680336
Alignment:
Q  328 atggcagaggcaaatagagcttctgcacattttcgttaatccatgagcaggatctatatacacacatagacctatgtatggatccatacataattataat 427  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||      |    
T  42680126 atggcagaagcaaatagagcttttgcacattttcgttaatccatgagtaggatctatatacacacgtagacctatgtatggatccatacataa------t 42680219  T
Q  428 tggaaaagaatcaatagaaaaagaatcggaattaatcgatatatctatcgaaacgaaagacgaaatagaaatgatggctcaactaagcacttttggagac 527  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  42680220 tggaaaagaatcaatagaaaaagaatcggaattaatcgatatatctatggaaacgaaagacaaaatagaaatgatggctcaactaagcacttttggggac 42680319  T
Q  528 ttgcttaagaataaata 544  Q
    |||||||||||||||||    
T  42680320 ttgcttaagaataaata 42680336  T

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Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 158 - 317
Target Start/End: Complemental strand, 3467637 - 3467492
Alignment:
Q  158 attcaaaacaaatgatattcagaaaaggatttttccccatttttggagtgtgtactgtatatgacaagagaaatgatatttcgacaatcaaattttgaca 257  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||              |||||||||    
T  3467637 attcaaaacaaatgatatccagaaaaggattttaccccatttttggagtgtgtactgtatatgacaagagaaatgat--------------attttgaca 3467552  T
Q  258 acaatttacattggtgacaagaaaaaggattaaagacattcaacaatttacattgttaac 317  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  3467551 acaatttacattgctgacaagagaaaggattaaagacattcaacaatttacattgttaac 3467492  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 37979048 - 37978964
Alignment:
Q  35 cacaagattaatgttgatggtctaattagaaattctcatggtaagttcgatcttgatctttacaataaatttggctactcctatg 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  37979048 cacaagattaatgttgatggtctaattagaaattctcatggtaagttcaatcttgatctttacaataaatttggatactcctatg 37978964  T

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Target: chr5 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 423 - 544
Target Start/End: Complemental strand, 35934768 - 35934647
Alignment:
Q  423 ataattggaaaagaatcaatagaaaaagaatcggaattaatcgatatatctatcgaaacgaaagacgaaatagaaatgatggctcaactaagc-actttt 521  Q
    ||||||||||||||||||||||||||| ||||  ||||||| |||||||||||||||||||||||| |||||||| |||||||| |||||| | ||||||    
T  35934768 ataattggaaaagaatcaatagaaaaataatcataattaatagatatatctatcgaaacgaaagac-aaatagaattgatggcttaactaaccaactttt 35934670  T
Q  522 ggagacttgcttaagaataaata 544  Q
    |  ||||||||||||||||||||    
T  35934669 gaggacttgcttaagaataaata 35934647  T

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Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 192007 - 192063
Alignment:
Q  328 atggcagaggcaaatagagcttctgcacattttcgttaatccatgagcaggatctat 384  Q
    |||||||||||||||||||||  ||||||||||||||||||||||| ||| ||||||    
T  192007 atggcagaggcaaatagagctcttgcacattttcgttaatccatgaacagaatctat 192063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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