View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0285_high_4 (Length: 251)
Name: NF0285_high_4
Description: NF0285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0285_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 7425860 - 7425621
Alignment:
| Q |
1 |
aaacaagagttacatgctttcttgcacgaactatttaactcaaaaaacaaaacaattttgttgaaggaccatctttcaactttgagtctcaatgttataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7425860 |
aaacaagagttacatgctttcttgcacgaactatttaattcaaaaaacaaaacaattttgttgaaggaccatctttcaactttgagtctcaatgttataa |
7425761 |
T |
|
| Q |
101 |
gtcgcatggttttggggaaaaagtatttggagaagagtgaaaatgctattatttcccctgaagagtttaagaagatgttagatgaattgtttttgcttaa |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7425760 |
gtcgcatggttttgggcaaaaagtatttggagaagagtgaaaatgctattatttcccctgaagagtttaagaagatgttagatgaattgtttttgcttaa |
7425661 |
T |
|
| Q |
201 |
tggggtcttcaatattggggattttattccttggattcat |
240 |
Q |
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| T |
7425660 |
tggggtcctcaatgttggggattttattccttggattcat |
7425621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 40 - 239
Target Start/End: Complemental strand, 7431810 - 7431611
Alignment:
| Q |
40 |
tcaaaaaacaaaacaattttgttgaaggaccatctttcaactttgagtctcaatgttataagtcgcatggttttggggaaaaagtatttggagaagagtg |
139 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||| ||||||| |||||||| |||||||| || || ||||||||||||| |
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| T |
7431810 |
tcaaaaaataaaactattttgttgaaggaccatctttcaacttttagtcttaatattataagccgcatggtgttggggaagaaatacttggagaagagtg |
7431711 |
T |
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| Q |
140 |
aaaatgctattatttcccctgaagagtttaagaagatgttagatgaattgtttttgcttaatggggtcttcaatattggggattttattccttggattca |
239 |
Q |
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| T |
7431710 |
aaaatgttattatttcccctgaagagtttaaggagatgttggatgagttgtttttgcttaatggggtcttcaatattggggattttattccttggattca |
7431611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 7416874 - 7416635
Alignment:
| Q |
1 |
aaacaagagttacatgctttcttgcacgaactatttaactcaaaaaacaaaacaattttgttgaaggaccatctttcaactttgagtctcaatgttataa |
100 |
Q |
| |
|
||||||||| | |||| ||| ||||| |||| || || ||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||| |
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| T |
7416874 |
aaacaagagatgcatgattttttgcataaacttttcaattcaaaaaacaaaacaattttggtgaaagaccatctttcaactttgagtctaaatgttataa |
7416775 |
T |
|
| Q |
101 |
gtcgcatggttttggggaaaaagtatttggagaagagtgaaaatgctattatttcccctgaagagtttaagaagatgttagatgaattgtttttgcttaa |
200 |
Q |
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|||| ||||| | ||||||||||| ||||| |||| ||| ||||| ||||||||||||| ||||||||||||||||| ||||| |||||||| ||||| |
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| T |
7416774 |
gtcgaatggtgctagggaaaaagtacttggaaaagactgataatgcagttatttcccctgatgagtttaagaagatgttggatgagttgtttttacttaa |
7416675 |
T |
|
| Q |
201 |
tggggtcttcaatattggggattttattccttggattcat |
240 |
Q |
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||| | |||||||||||||||||||||||||||||||| |
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| T |
7416674 |
tggaattctcaatattggggattttattccttggattcat |
7416635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 110
Target Start/End: Original strand, 7429973 - 7430039
Alignment:
| Q |
44 |
aaaacaaaacaattttgttgaaggaccatctttcaactttgagtctcaatgttataagtcgcatggt |
110 |
Q |
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|||| ||||| |||| ||| |||||||||||||||||||| ||| ||||| |||| ||||||||||| |
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| T |
7429973 |
aaaataaaactatttcgttaaaggaccatctttcaacttttagtttcaatattattagtcgcatggt |
7430039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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