View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0285_low_2 (Length: 349)
Name: NF0285_low_2
Description: NF0285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0285_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 96 - 288
Target Start/End: Original strand, 42402893 - 42403084
Alignment:
| Q |
96 |
catcatcataatagtcctctccacactccnnnnnnnntaggacattcaaagaacaaatgtctcgccgattctaccacttggcaacctccaatgcacctaa |
195 |
Q |
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| T |
42402893 |
catcaccataatagtcctctccacactccaaaaaaa-taggacattcaaagaacaaatgtctcgccgattctaccacttggcaaccaccaatgcacctaa |
42402991 |
T |
|
| Q |
196 |
ccatgtcaccgcctataatacctcttttcaataggttatcccttgaactagctctaaaatgtgtatactttgcctacaattttgttcgagatc |
288 |
Q |
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|| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42402992 |
ccgtgtcaccgcctataacacctcttttcaataggttatcccttgaactagctctaaaatgtgtatactttgcctacaattttgtttgagatc |
42403084 |
T |
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