View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0285_low_3 (Length: 315)
Name: NF0285_low_3
Description: NF0285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0285_low_3 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 29 - 315
Target Start/End: Complemental strand, 7426274 - 7425988
Alignment:
| Q |
29 |
acatttatcatccttcttctctttacccgccgccgtcttcatctcactcgacgtaaatacaatctaccacctggcccaaaatcatggcccataataggaa |
128 |
Q |
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| T |
7426274 |
acatttatcatccttcttctctttacccgccgccgtcttcgtctccaccgccgtaaatacaatctaccacctggcccaaaatcatggcccataataggaa |
7426175 |
T |
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| Q |
129 |
atctcaatcttattggatcactcccgcatcaatctctccatgggctcactaaaaaatatggacccatcatgcatttatggttcggctctaaacctgtcat |
228 |
Q |
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| T |
7426174 |
atctcaatcttattggatcacttccacatcaatccctccacgggctcactaaaaaatatggacccatcatgcatttatggttcggctctaaacctgtcat |
7426075 |
T |
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| Q |
229 |
tgtgggatcgagcccagaaatagccaaagctttcctcaaaacaaacgacgctgtccttgctgggcggcccaaattctccgctggaaa |
315 |
Q |
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| T |
7426074 |
tgtgggatcgagcccagaaatagccaaagttttcctcaaaacaaacgacgctgtccttgctgggcggcccaaattctccgctggaaa |
7425988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 61 - 287
Target Start/End: Complemental strand, 7432231 - 7432005
Alignment:
| Q |
61 |
ccgtcttcatctcactcgacgtaaatacaatctaccacctggcccaaaatcatggcccataataggaaatctcaatcttattggatcactcccgcatcaa |
160 |
Q |
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| T |
7432231 |
ccgtcttcgtctccatcgccgcaaatacaatctaccaccaggaccaaaaccatggcctataataggaaatatgaaccttatcggatccctcccacatcaa |
7432132 |
T |
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| Q |
161 |
tctctccatgggctcactaaaaaatatggacccatcatgcatttatggttcggctctaaacctgtcattgtgggatcgagcccagaaatagccaaagctt |
260 |
Q |
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| T |
7432131 |
tccatccatgggctcactaaaaaatatggccccatcatgcgtctatggttcggatccaaactcgtcattgtgggctcgagcccagatatagccaaagctt |
7432032 |
T |
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| Q |
261 |
tcctcaaaacaaacgacgctgtccttg |
287 |
Q |
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| T |
7432031 |
tccttaaaacaaacgacattgtccttg |
7432005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 83 - 315
Target Start/End: Complemental strand, 7417234 - 7417002
Alignment:
| Q |
83 |
aaatacaatctaccacctggcccaaaatcatggcccataataggaaatctcaatcttattggatcactcccgcatcaatctctccatgggctcactaaaa |
182 |
Q |
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| T |
7417234 |
aaatacaatctaccaccaggcccaaaaccatggcctataattggaaatctcaaccttatcggatccctcccacatcaatccctccatggcctcactcaaa |
7417135 |
T |
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| Q |
183 |
aatatggacccatcatgcatttatggttcggctctaaacctgtcattgtgggatcgagcccagaaatagccaaagctttcctcaaaacaaacgacgctgt |
282 |
Q |
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|||||||||||||||||||| ||| |||||||| ||||| ||||||||||| | | | |||| |||||||| | ||||||||||| | || ||| |
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| T |
7417134 |
aatatggacccatcatgcatctatatttcggctcgaaacccgtcattgtgggcgccaccgtagaactagccaaatcattcctcaaaacccatgatgctac |
7417035 |
T |
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| Q |
283 |
ccttgctgggcggcccaaattctccgctggaaa |
315 |
Q |
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||||| || ||||||||||| || |||||||| |
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| T |
7417034 |
tcttgccggccggcccaaattgtcggctggaaa |
7417002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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