View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0287_high_17 (Length: 250)
Name: NF0287_high_17
Description: NF0287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0287_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 39521407 - 39521627
Alignment:
| Q |
1 |
aagacggatttggttttccaacgatctttgtgagtgaaaaccgccactataagtagttaagccccgaccattagaaccgatgtaattgaaacgtgctact |
100 |
Q |
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| T |
39521407 |
aagacggagtttggtttccaacgatcgttgtgagtgtaaaccgccactataagtagttaagccccgaccagtagaaccgatgtaattgaaacgtgctact |
39521506 |
T |
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| Q |
101 |
gaatcggggattaaatgaagagggagcataaagagttcaattgcattaacaaacgcaaatgatgatgtttgaggtgtgaaagtgattgtgaatctttttc |
200 |
Q |
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| T |
39521507 |
gaatcggggattaaatgaagagggagcataaagagttcaattgcattaacaaacgcaaatgatgatgtttgaggtgtgaaagtgattgtgaatctttttc |
39521606 |
T |
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| Q |
201 |
tgatgattttaacgtaatact |
221 |
Q |
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| T |
39521607 |
tgatgattttaacgtaatact |
39521627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 80 - 221
Target Start/End: Original strand, 39544279 - 39544420
Alignment:
| Q |
80 |
atgtaattgaaacgtgctactgaatcggggattaaatgaagagggagcataaagagttcaattgcattaacaaacgcaaatgatgatgtttgaggtgtga |
179 |
Q |
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| T |
39544279 |
atgtaattgaaacgagctattgaattgggtattaaatgaagagggagaataaagagttcaaatgcattaaaaaacgcaaatgaagatgtttgaggtgtga |
39544378 |
T |
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| Q |
180 |
aagtgattgtgaatctttttctgatgattttaacgtaatact |
221 |
Q |
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| T |
39544379 |
aagtgattgtgaatctttttctgatgattttaacgtaatact |
39544420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 100 - 221
Target Start/End: Original strand, 39576151 - 39576272
Alignment:
| Q |
100 |
tgaatcggggattaaatgaagagggagcataaagagttcaattgcattaacaaacgcaaatgatgatgtttgaggtgtgaaagtgattgtgaatcttttt |
199 |
Q |
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| T |
39576151 |
tgaatcagggattaaatgaaccggaagcataaagagttctattgcattaacaaacgcaaatgatgatgtttgaggtgtgaatatgattttgaatcttttt |
39576250 |
T |
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| Q |
200 |
ctgatgattttaacgtaatact |
221 |
Q |
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| T |
39576251 |
ctaatgattttaacgtaatact |
39576272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 104 - 221
Target Start/End: Original strand, 39525007 - 39525124
Alignment:
| Q |
104 |
tcggggattaaatgaagagggagcataaagagttcaattgcattaacaaacgcaaatgatgatgtttgaggtgtgaaagtgattgtgaatctttttctga |
203 |
Q |
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| T |
39525007 |
tcggggattaaatgaacagggagcataaagagttctattgcattagcaaaggcaaatgatgctttttgaggtgtgaacgtgattttgaatttttttctga |
39525106 |
T |
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| Q |
204 |
tgattttaacgtaatact |
221 |
Q |
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| T |
39525107 |
tgattttaaggtaatact |
39525124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 38 - 212
Target Start/End: Original strand, 39580629 - 39580803
Alignment:
| Q |
38 |
aaaccgccactataagtagttaagccccgaccattagaaccgatgtaattgaaacgtgctactgaatcggggattaaatgaagagggagcataaagagtt |
137 |
Q |
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| T |
39580629 |
aaaccgccagtgtaagaagataagccttgaccagtagaattaatgtaattgaaatgtgtgactgattcggggatgaaatgagtggggagtataaagagtt |
39580728 |
T |
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| Q |
138 |
caattgcattaacaaacgcaaatgatgatgtttgaggtgtgaaagtgattgtgaatctttttctgatgattttaa |
212 |
Q |
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| T |
39580729 |
ccattgcattaacaaacgcaaatgatgaggtttgaggtgtgaaagtgattttgaatcttttacgggtgattttaa |
39580803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 98 - 216
Target Start/End: Original strand, 39511258 - 39511376
Alignment:
| Q |
98 |
actgaatcggggattaaatgaagagggagcataaagagttcaattgcattaacaaacgcaaatgatgatgtttgaggtgtgaaagtgattgtgaatcttt |
197 |
Q |
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|||||||| ||||||||||||| ||||||| ||||||||| ||||| |||||||| || | ||||||| |||||||||||||||||||| ||||||||| |
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| T |
39511258 |
actgaatcagggattaaatgaacggggagcacaaagagttctattgcgttaacaaatgcgagtgatgatttttgaggtgtgaaagtgattttgaatcttt |
39511357 |
T |
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| Q |
198 |
ttctgatgattttaacgta |
216 |
Q |
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| T |
39511358 |
ttctgatgatttgaacgta |
39511376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 3331315 - 3331271
Alignment:
| Q |
140 |
attgcattaacaaacgcaaatgatgatgtttgaggtgtgaaagtg |
184 |
Q |
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| T |
3331315 |
attgcattaacaaatgcaaatgatgatgtttgaggtgtgaaagtg |
3331271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 3331696 - 3331659
Alignment:
| Q |
184 |
gattgtgaatctttttctgatgattttaacgtaatact |
221 |
Q |
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| T |
3331696 |
gattgtgaatctttttatgatgattttaacgtaatact |
3331659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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