View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0287_high_20 (Length: 248)
Name: NF0287_high_20
Description: NF0287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0287_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 28 - 245
Target Start/End: Original strand, 594382 - 594599
Alignment:
| Q |
28 |
cccagggaggaagcatcgattgttctcaaggtagttgatgcctatcttgtgtcaaacctagaagcttatgctggaagtgatttttatgaggctgctttgc |
127 |
Q |
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| T |
594382 |
cccagggaggaagcatcgattgttctcaaggtagttgatgcctatcttgtgtcaaacctagaagcttatgttggaagtgatctttatgaggctgctttgc |
594481 |
T |
|
| Q |
128 |
ataattacaattgaagtcgtgattgttgtattatttcgttgatcgattttgaaattcgtactgcaggaatgtgataagtttatgttaatgagaaaaagca |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
594482 |
ataattacaattgaagtcgtgattgttgtattatttcgttgatcgattttgaaattcgtactgcaggaatgtgataagtttatgttaatgagaaaaagca |
594581 |
T |
|
| Q |
228 |
ccaagtttgatgttgcca |
245 |
Q |
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|||||||||||||||||| |
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| T |
594582 |
ccaagtttgatgttgcca |
594599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 138 - 245
Target Start/End: Original strand, 37550722 - 37550829
Alignment:
| Q |
138 |
ttgaagtcgtgattgttgtattatttcgttgatcgattttgaaattcgtactgcaggaatgtgataagtttatgttaatgagaaaaagcaccaagtttga |
237 |
Q |
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|||||||||||||||||||||| || |||||| ||||| ||||||| | ||||||| | |||| |||||||||| | ||||||||||||| |||||||| |
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| T |
37550722 |
ttgaagtcgtgattgttgtatttatttgttgattgatttcgaaattcatgctgcaggcacgtgagaagtttatgtcattgagaaaaagcactaagtttga |
37550821 |
T |
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| Q |
238 |
tgttgcca |
245 |
Q |
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| T |
37550822 |
tgatgcca |
37550829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 138 - 245
Target Start/End: Original strand, 37653551 - 37653658
Alignment:
| Q |
138 |
ttgaagtcgtgattgttgtattatttcgttgatcgattttgaaattcgtactgcaggaatgtgataagtttatgttaatgagaaaaagcaccaagtttga |
237 |
Q |
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|||||||||||||||||||||| || |||||| ||||| ||||||| | ||||||| | |||| |||||||||| | ||||||||||||| |||||||| |
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| T |
37653551 |
ttgaagtcgtgattgttgtatttatttgttgattgatttcgaaattcatgctgcaggcacgtgagaagtttatgtcattgagaaaaagcactaagtttga |
37653650 |
T |
|
| Q |
238 |
tgttgcca |
245 |
Q |
| |
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| T |
37653651 |
tgatgcca |
37653658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 245
Target Start/End: Original strand, 39925810 - 39925917
Alignment:
| Q |
138 |
ttgaagtcgtgattgttgtattatttcgttgatcgattttgaaattcgtactgcaggaatgtgataagtttatgttaatgagaaaaagcaccaagtttga |
237 |
Q |
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|||||||| ||||||||||||| ||||||||| ||||||||||| | | ||||| | | | |||||||||| | ||||||||| |||||||||||| |
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| T |
39925810 |
ttgaagtcatgattgttgtatttgttcgttgattgattttgaaatccatgttgcagacacctaagaagtttatgtcattgagaaaaaacaccaagtttga |
39925909 |
T |
|
| Q |
238 |
tgttgcca |
245 |
Q |
| |
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|| ||||| |
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| T |
39925910 |
tgatgcca |
39925917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 39915707 - 39915631
Alignment:
| Q |
163 |
tcgttgatcgattttgaaattcgtactgcaggaatgtgataagtttatgttaatgagaaaaagcaccaagtttgatg |
239 |
Q |
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|||||||| ||||||||||||| | |||||| | |||| |||||||| | | ||||||||||||| |||||||||| |
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| T |
39915707 |
tcgttgattgattttgaaattcatgttgcaggcacgtgagaagtttatttcattgagaaaaagcactaagtttgatg |
39915631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 45085054 - 45085100
Alignment:
| Q |
198 |
gtgataagtttatgttaatgagaaaaagcaccaagtttgatgttgcc |
244 |
Q |
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|||| |||||||||| | ||||||||||||||||||||||||||||| |
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| T |
45085054 |
gtgagaagtttatgtcattgagaaaaagcaccaagtttgatgttgcc |
45085100 |
T |
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