View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0287_high_4 (Length: 400)
Name: NF0287_high_4
Description: NF0287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0287_high_4 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 32 - 400
Target Start/End: Complemental strand, 46558006 - 46557635
Alignment:
| Q |
32 |
gacaatgtttcgagtaaaacacatgtgttgttttcttaaacatcaatgtttaaatacatattgatctttgctccacattacgaaaattcttataaaatag |
131 |
Q |
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| T |
46558006 |
gacaatgtttcgagtaaaacgcatgtgttgttttcttaaacatcaatgtttaaatacatattgacctttgctccacattacaaaaattcttataaaatag |
46557907 |
T |
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| Q |
132 |
ataaatatcaaatatttaaaattccacatcaa----gaggtatatctggggatgattgtgaatggcaaaagaagaaatnnnnnnnngtgaagaggcatct |
227 |
Q |
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| T |
46557906 |
ataaatatcaaatatttaaaattccacatcaattaagaggtatatctggggatgattgtgaatggcaaaagaagaaataaaaaaa-gtgaagaggcatct |
46557808 |
T |
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| Q |
228 |
gatgctatattgataagtttgtagtgtccaagtggatggatgaattggtattagttaaatttgtttgaataacactcaatatctttatcactacaaataa |
327 |
Q |
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| T |
46557807 |
gatgctatattgataagtttgtagtgtccaagtggatggatgaattggtattagttaaatttgtttgaataacactcagtatctttatcactacaaatac |
46557708 |
T |
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| Q |
328 |
gattccgtatttgtatgccatgatatttttaaattctattataaggtgataatgatgataactttatattatt |
400 |
Q |
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| T |
46557707 |
gattccgtatttgtatgccatgatgtttttaaattctattataaggtgataatgatgataactttatattatt |
46557635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 46558049 - 46558011
Alignment:
| Q |
3 |
agtcactcgcacttgaactcaacaagtaagacaatgttt |
41 |
Q |
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| T |
46558049 |
agtcactcgcacttgaactcaacaagtaagacaatgttt |
46558011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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