View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0287_high_5 (Length: 395)
Name: NF0287_high_5
Description: NF0287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0287_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 46 - 386
Target Start/End: Original strand, 34398312 - 34398652
Alignment:
| Q |
46 |
agaaaattaatgttaggatgatcaccctcgtgagaatgattttattccttttgtctcgaatggttaataaccaccagacaattgaacagaacgttcttag |
145 |
Q |
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| T |
34398312 |
agaaaattaatgttaggatgatcaccctcgtgagaatgattttattccttttgtctcgaatgtttaataaccaccagacaattgaacagaacgttcttag |
34398411 |
T |
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| Q |
146 |
gtatatatatcaattgaaaataggcaatcagtgggtaccaaagagatttaattatgttcctaccacatgaggatttcattcaaattgtttgtccactttt |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34398412 |
gtatatatatcaattgaaaataggcaatcagtgggtaccaaagagatttaattatgttcctaccacatgaggatttcattcaaattgtttgtacactttt |
34398511 |
T |
|
| Q |
246 |
agacgttacatggtccttaatttcagttgttttgcattcgtcatatcattgcagaaaatggaacaatcaatttaggttaattcttccatcaaatcacgaa |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34398512 |
agacgttacatggtccttaatttcagttgttttgcattcgttatatcattgcagaaaatggaacaatcaatttaggttaattcttccatcaaatcacgaa |
34398611 |
T |
|
| Q |
346 |
tagtttaggagaattagagtttgatttttaggcagaataat |
386 |
Q |
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|| |||||||||||| |||||||||||||| |||||||||| |
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| T |
34398612 |
taatttaggagaattcgagtttgatttttaagcagaataat |
34398652 |
T |
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