View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0287_low_10 (Length: 330)
Name: NF0287_low_10
Description: NF0287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0287_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 39521446 - 39521128
Alignment:
| Q |
1 |
tttacactcacaacgatcgttggaaaccaaactccgtcttaacgtcggtgaccaaactgtcgatagaggaaccgatacattatcgagagaatggttacca |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39521446 |
tttacactcacaacgatcgttggaaaccaaactccgtcttaacgtcggtgaccaaactgtcgatagaggaaccgatacattatcgagagaatggttagca |
39521347 |
T |
|
| Q |
101 |
gatgacagttatgtaactaatctacaaaacgctaagaatcacttctttgacggtggtattccacgcactgcaaatgatacatctgatggtccaaattcaa |
200 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||| || |||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39521346 |
gatgacagttatgtaactaatccacaaaacgctaagaatcgctcctttgacgttcatattccacgcactgcaaatgatacatctgatggtccaaattcaa |
39521247 |
T |
|
| Q |
201 |
atcaatatattgctccagacagggtttatcaaactggcaaagagagtattaacggttctagcagcataagttggagggttcctgtagagaagaacgtaga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
39521246 |
atcaatatattgctccagacagggtttatcaaactggcaaagagagtattaacggttctagcaacataagttggagtgttcctgtagagaagaacgtaga |
39521147 |
T |
|
| Q |
301 |
tcatttacttaggtttcat |
319 |
Q |
| |
|
||||||||||||||||||| |
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| T |
39521146 |
tcatttacttaggtttcat |
39521128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 39576088 - 39575770
Alignment:
| Q |
1 |
tttacactcacaacgatcgttggaaaccaaactccgtcttaacgtcggtgaccaaactgtcgatagaggaaccgatacattatcgagagaatggttacca |
100 |
Q |
| |
|
|||||||||||||||| | |||||||| |||| ||| |||||||||||| ||| || ||||||||||| ||||| ||||||||||||||||||||| |
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| T |
39576088 |
tttacactcacaacgagccttggaaacaaaacatcgttttaacgtcggtgggggaaccgttgatagaggaactgatactttatcgagagaatggttacca |
39575989 |
T |
|
| Q |
101 |
gatgacagttatgtaactaatctacaaaacgctaagaatcacttctttgacggtggtattccacgcactgcaaatgatacatctgatggtccaaattcaa |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39575988 |
gatgacagatatgtaactaatctacaaaacgctaagaattgctcctttgacggtgatattccacgcactgcaaatgatacgtctgatggtccaaattcaa |
39575889 |
T |
|
| Q |
201 |
atcaatatattgctccagacagggtttatcaaactggcaaagagagtattaacggttctagcagcataagttggagggttcctgtagagaagaacgtaga |
300 |
Q |
| |
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||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39575888 |
atcaatatattgctccagatattgtttataaaactggcaaagagagtattaacggttctagcagcataagttggagtgttcctgtagagaagaacgtaga |
39575789 |
T |
|
| Q |
301 |
tcatttacttaggtttcat |
319 |
Q |
| |
|
|||||| |||||||||||| |
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|
| T |
39575788 |
tcattttcttaggtttcat |
39575770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 55 - 246
Target Start/End: Complemental strand, 39544188 - 39543997
Alignment:
| Q |
55 |
aactgtcgatagaggaaccgatacattatcgagagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttgacggt |
154 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| | ||||| | | |
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|
| T |
39544188 |
aactgtcgatagaaaaaccgatactttatcgagagaatggttaccagatgacagttatataactaatccacaaaacgctaagaatggttcctttgcagat |
39544089 |
T |
|
| Q |
155 |
ggtattccacgcactgcaaatgatacatctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagag |
246 |
Q |
| |
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| ||| ||||||||||||| |||||| ||| ||||||||||||||| |||||||||||| ||| |||||| |||||| ||||||||| |
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| T |
39544088 |
gaaattaaacgcactgcaaataatacatatgaaggtccaaattcaaatatatatattgctccggacgctgtttatgaaactgccaaagagag |
39543997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 14 - 311
Target Start/End: Complemental strand, 39524933 - 39524630
Alignment:
| Q |
14 |
cgatcgttggaaaccaaactccgtcttaacgtcggtgaccaaactgtcgatagaggaaccgatacattatcgagagaatggttaccagatgacagttatg |
113 |
Q |
| |
|
||||||||||||||||| ||||||||||| || |||| | || ||| |||||| ||| |||||| |||| ||||||||||||||||||||||| ||| |
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|
| T |
39524933 |
cgatcgttggaaaccaacctccgtcttaatgttggtggcggaattgttaatagagaaactgatacactatcaagagaatggttaccagatgacagatata |
39524834 |
T |
|
| Q |
114 |
taactaatctacaaaacgctaagaatcacttctttgacggtggtattccacgcactgcaaatgatacatctgatggtccaaattcaaatcaatatattgc |
213 |
Q |
| |
|
||||| ||| ||||||||||||||| | |||||| |||| |||| |||||||||||||||| ||||| || | ||||||||||| |||| || | |
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| T |
39524833 |
taactgatccccaaaacgctaagaatggttcctttgaaggtgatattaaacgcactgcaaatgatgaatctgttgattcaaattcaaataaatacatagg |
39524734 |
T |
|
| Q |
214 |
tccagacagggtttatcaaactggcaaagagagtattaacggttctagc------agcataagttggagggttcctgtagagaagaacgtagatcattta |
307 |
Q |
| |
|
|||||| | |||||| |||||| ||||| |||| |||| ||||| | | | |||||||||||| |||||||| |||||||| |||||||||| |
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| T |
39524733 |
tccagatattgtttataaaactgccaaagtgagtgttaatggttcaatcggtttaaacataagttggagtgttcctgtggagaagaatatagatcatttc |
39524634 |
T |
|
| Q |
308 |
ctta |
311 |
Q |
| |
|
|||| |
|
|
| T |
39524633 |
ctta |
39524630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 39511200 - 39510957
Alignment:
| Q |
1 |
tttacactcacaacgatcgttggaaaccaaactccgtcttaacgtcggtgaccaaactgtcgatagaggaaccgatacattatcgagagaatggttacca |
100 |
Q |
| |
|
|||| ||||||||||| | |||||||| |||| ||||||||||| || | | | |||| ||||| | ||||||||||||| ||||||||||||| | |
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|
| T |
39511200 |
tttaaactcacaacgagctttggaaacgaaacatcgtcttaacgtaggcggtgataatgtcactagagaagccgatacattatcaagagaatggttacga |
39511101 |
T |
|
| Q |
101 |
gatgacagttatgtaactaatctacaaaacgctaagaatcacttctttgacggtggtattccacgcactgcaaatgatacatctgatggtccaaattcaa |
200 |
Q |
| |
|
|||||||| || ||||||||| |||||| || |||| | | ||||| ||| |||| || | ||||||||||| |||||||||||||||||||| |
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|
| T |
39511100 |
gatgacagatacataactaatccacaaaatgcgaagattggttcctttg---gtgatattaaacacgctgcaaatgatgaatctgatggtccaaattcaa |
39511004 |
T |
|
| Q |
201 |
atcaatatattgctccagacagggtttatcaaactggcaaagagagt |
247 |
Q |
| |
|
| |||||||| |||||| | |||||| |||||||| |||||||| |
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|
| T |
39511003 |
gtatatatattggtccagatattgtttataaaactggccaagagagt |
39510957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 220
Target Start/End: Complemental strand, 39580543 - 39580415
Alignment:
| Q |
92 |
tggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttgacggtggtattccacgcactgcaaatgatacatctgatggtc |
191 |
Q |
| |
|
|||||||||||||||||||| | ||||||| ||| |||||||||||| ||||||| |||| |||| |||||||||| |||| ||||||||||| |
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|
| T |
39580543 |
tggttaccagatgacagttacatcactaatccacataacgctaagaatggtttctttggaggtgatattaaacgcactgcaggtgatgaatctgatggtc |
39580444 |
T |
|
| Q |
192 |
caaattcaaatcaatatattgctccagac |
220 |
Q |
| |
|
||||||||||| | |||||| ||||||| |
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|
| T |
39580443 |
caaattcaaatatacatattggtccagac |
39580415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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