View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0287_low_11 (Length: 309)
Name: NF0287_low_11
Description: NF0287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0287_low_11 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 4 - 309
Target Start/End: Complemental strand, 595265 - 594960
Alignment:
| Q |
4 |
cagagagagggcgacagacaatccatccaagatttatacgttcatttgagtacttagtcgactacttatgaacccgtgataagttgtaaaagcaaaactg |
103 |
Q |
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| T |
595265 |
cagagagagggcgacagacaatccatccaagatttatacgttcatttgagtacttagtcgactacttatgaacccgtgataagttgtaaaagcaaaactg |
595166 |
T |
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| Q |
104 |
caagggtacaaatctgcaaattaatgatgaactttggaaaatattcttgctttactctcatttcagaaaacatagcccatatacatgaatcctagaatgc |
203 |
Q |
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| T |
595165 |
caatggtacaaatctgcaaattaatgatgaactttggaaaatattcttgctttactctcatttcagaaaacatagcccatatacatgaatcctagaatgc |
595066 |
T |
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| Q |
204 |
aaatccttaaagaacaataagaaaaatattattcatttgcatagacagtttaagattcttacggcaaagctttcttatgtggatccttaaagaacacaca |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
595065 |
aaatccttaaagaacaataagaaaaatattattcatttgcattgacagtttaagattcttacggcaaagctttcttatgcggatccttaaagaacccaca |
594966 |
T |
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| Q |
304 |
aataaa |
309 |
Q |
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|||||| |
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| T |
594965 |
aataaa |
594960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 130 - 298
Target Start/End: Original strand, 28168753 - 28168922
Alignment:
| Q |
130 |
atgaactttggaaaatattcttgctttactctcatttcagaaaacatagcccatatacatgaatcctagaatgcaaatccttaaagaacaataagaaaaa |
229 |
Q |
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| T |
28168753 |
atgaactttggaaaatgttcttgcttcagtctcatttccaaaaacatagtccatatacctgaatcccagaatgcaaatccttaaagatcaataagaaaaa |
28168852 |
T |
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| Q |
230 |
tattattcatttgca-tagacagtttaagattcttacggcaaagctttcttatgtggatccttaaagaac |
298 |
Q |
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| T |
28168853 |
aataatttatttcaatttaacagtttaggattcttacggcagagctttctcctgtggatccttgaagaac |
28168922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 130 - 229
Target Start/End: Complemental strand, 22476977 - 22476878
Alignment:
| Q |
130 |
atgaactttggaaaatattcttgctttactctcatttcagaaaacatagcccatatacatgaatcctagaatgcaaatccttaaagaacaataagaaaaa |
229 |
Q |
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||||||||| |||||| | | ||||| | ||||||||| || |||||| |||||||| ||||||| |||||||||| ||||||||| |||||||||||| |
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| T |
22476977 |
atgaactttcgaaaatgtccgtgcttcagtctcatttccaaatacatagtccatatacctgaatcccagaatgcaaacccttaaagatcaataagaaaaa |
22476878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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