View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0287_low_13 (Length: 300)
Name: NF0287_low_13
Description: NF0287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0287_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 52 - 256
Target Start/End: Original strand, 38831502 - 38831706
Alignment:
| Q |
52 |
atcttaaaaacctcagaacttttacttctagctgcagcatacaaaatatcagtaacaccatactcaccttctccaaaaacaagagaagattctctcctca |
151 |
Q |
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| T |
38831502 |
atcttaaaaacctcagaacttttacttctagctgcagcatacaaaatatcagtaacaccatactcaccttctccaaaaacaagagaagattctctcctca |
38831601 |
T |
|
| Q |
152 |
acaattcacaaacaaattccatatcaccagctgaagcagcagtgtaaagaagccatccaccatatccagctttaaccaaagagtttcttcttttctggtt |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38831602 |
acaattcacaaacaaattccatatcaccagctgaagcagcagtgtaaagaagccatccaccatatccagctttaaccaaagagtttcttcttttctggtt |
38831701 |
T |
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| Q |
252 |
ttttc |
256 |
Q |
| |
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||||| |
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| T |
38831702 |
ttttc |
38831706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 61 - 219
Target Start/End: Complemental strand, 34397296 - 34397138
Alignment:
| Q |
61 |
acctcagaacttttacttctagctgcagcatacaaaatatcagtaacaccatactcaccttctccaaaaacaagagaagattctctcctcaacaattcac |
160 |
Q |
| |
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||||||||| | ||||| |||||||||||||| || |||||||||||||||||||| ||||| |||||||| | |||| ||||| |||||||||||| |
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| T |
34397296 |
acctcagaattcttactcctagctgcagcataaaacatatcagtaacaccatactctccttcaccaaaaaccaacaaagaatctcttctcaacaattcat |
34397197 |
T |
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| Q |
161 |
aaacaaattccatatcaccagctgaagcagcagtgtaaagaagccatccaccatatcca |
219 |
Q |
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||||||| |||| ||||||||| |||||||||||||| | ||||||||||||||||||| |
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| T |
34397196 |
aaacaaactccaaatcaccagcagaagcagcagtgtacaaaagccatccaccatatcca |
34397138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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