View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0287_low_16 (Length: 289)

Name: NF0287_low_16
Description: NF0287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0287_low_16
NF0287_low_16
[»] chr7 (4 HSPs)
chr7 (34-129)||(22685504-22685599)
chr7 (232-275)||(22685330-22685373)
chr7 (78-129)||(29979942-29979993)
chr7 (53-129)||(21925125-21925197)
[»] chr6 (1 HSPs)
chr6 (33-133)||(4593381-4593480)
[»] chr4 (2 HSPs)
chr4 (29-129)||(51880470-51880571)
chr4 (57-119)||(54721844-54721904)
[»] chr5 (3 HSPs)
chr5 (34-129)||(31911762-31911860)
chr5 (86-129)||(33093413-33093456)
chr5 (57-129)||(7959558-7959628)
[»] chr3 (3 HSPs)
chr3 (41-129)||(1346719-1346812)
chr3 (34-129)||(50653561-50653660)
chr3 (92-129)||(27456821-27456858)
[»] chr1 (4 HSPs)
chr1 (50-133)||(19020074-19020156)
chr1 (64-129)||(42066888-42066953)
chr1 (56-119)||(58647-58709)
chr1 (65-129)||(6132896-6132958)
[»] chr8 (3 HSPs)
chr8 (83-133)||(5912209-5912259)
chr8 (89-129)||(33023944-33023984)
chr8 (86-129)||(35585051-35585094)
[»] chr2 (2 HSPs)
chr2 (56-119)||(44942119-44942182)
chr2 (53-126)||(42962696-42962767)


Alignment Details
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 22685599 - 22685504
Alignment:
Q  34 gaacctgcaatttgaaccctaactaataagtatataaaaagaaattgacttcctaaagtgtgaaaataattttattgaagatgatagtttttatta 129  Q
    |||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22685599 gaacctacaatttaagccctaactaataagtatataaaaagaaattgacttcctaaagtgtgaaaataattttattgaagatgatagttattatta 22685504  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 22685373 - 22685330
Alignment:
Q  232 gggcttaggaaggtctccctcctcgctctgcctcagatacggcc 275  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  22685373 gggcttaggaaggtccccctcctcgctctgcctcagatacggcc 22685330  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 29979993 - 29979942
Alignment:
Q  78 ttgacttcctaaagtgtgaaaataattttattgaagatgatagtttttatta 129  Q
    |||| |||||| |||||||||||||| || |||||||||||| |||||||||    
T  29979993 ttgaattcctagagtgtgaaaataatatttttgaagatgataatttttatta 29979942  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 21925197 - 21925125
Alignment:
Q  53 taactaataagtatataaaaagaaattgacttcctaaagtgtgaaaataattttattgaagatgatagtttttatta 129  Q
    |||||||||||||||||||||  | |||  || ||||||||||||  ||||||| |||||| |||||||||||||||    
T  21925197 taactaataagtatataaaaa--atttgcatttctaaagtgtgaa--taattttcttgaaggtgatagtttttatta 21925125  T

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Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 33 - 133
Target Start/End: Complemental strand, 4593480 - 4593381
Alignment:
Q  33 tgaacctgcaatttgaaccctaactaataagtatataaaaagaaattgacttcctaaagtgtgaaaataattttattgaagatgatagtttttattatgt 132  Q
    ||||||| || ||||  |||||||||||||||| | ||||| ||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  4593480 tgaacctacagtttgggccctaactaataagtacaaaaaaa-aaattgaattcctaaagtgtaaaaataattttcttgaagatgatagtttttattatgt 4593382  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 129
Target Start/End: Original strand, 51880470 - 51880571
Alignment:
Q  29 agggtgaacctgcaatttgaaccctaactaataagtatata-aaaagaaattgacttcctaaagtgtgaaaataattttattgaagatgatagtttttat 127  Q
    |||| ||||||  ||||||  |||||||||||||||| ||| |||| ||||||| ||||||||||||||||||| |||| ||||| ||||||||||||||    
T  51880470 agggcgaacctataatttgggccctaactaataagtacatataaaaaaaattgaattcctaaagtgtgaaaatatttttcttgaatatgatagtttttat 51880569  T
Q  128 ta 129  Q
    ||    
T  51880570 ta 51880571  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 54721904 - 54721844
Alignment:
Q  57 taataagtatataaaaagaaattgacttcctaaagtgtgaaaataattttattgaagatgata 119  Q
    |||||||||||||| ||  |||| | ||| |||||||||||||||||||| ||||||||||||    
T  54721904 taataagtatataataa--aattaaattcttaaagtgtgaaaataattttcttgaagatgata 54721844  T

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Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 31911860 - 31911762
Alignment:
Q  34 gaacctgcaatttgaaccctaactaataagtatataaaaaga---aattgacttcctaaagtgtgaaaataattttattgaagatgatagtttttatta 129  Q
    |||||| |||||||| |||||||||||||||||||||||  |   ||| || |||||||||||||||||||||||| ||||||||||| ||||| ||||    
T  31911860 gaacctacaatttgagccctaactaataagtatataaaagtataaaatcgaattcctaaagtgtgaaaataattttcttgaagatgatggttttcatta 31911762  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 33093456 - 33093413
Alignment:
Q  86 ctaaagtgtgaaaataattttattgaagatgatagtttttatta 129  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  33093456 ctaaagtgtgaaaataattttcttgaagatgatagtttttatta 33093413  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 7959628 - 7959558
Alignment:
Q  57 taataagtatataaaaagaaattgacttcctaaagtgtgaaaataattttattgaagatgatagtttttatta 129  Q
    ||||||| |||||||||  |||||| || ||||||||||||||||||||  ||||| ||||| ||||||||||    
T  7959628 taataagcatataaaaa--aattgaatttctaaagtgtgaaaataatttacttgaaaatgatggtttttatta 7959558  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 41 - 129
Target Start/End: Complemental strand, 1346812 - 1346719
Alignment:
Q  41 caatttgaaccctaactaataagtatata----aaaagaaa-ttgacttcctaaagtgtgaaaataattttattgaagatgatagtttttatta 129  Q
    ||||||||||||||| |||||||||||||    |||||||| |||| |||||||||||| ||||||||||| || |||||||||||||||||||    
T  1346812 caatttgaaccctaattaataagtatatataaaaaaagaaaattgaattcctaaagtgtaaaaataattttcttaaagatgatagtttttatta 1346719  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 50653660 - 50653561
Alignment:
Q  34 gaacctgcaatttgaaccctaactaataagtatataaaaagaa----attgacttcctaaagtgtgaaaataattttattgaagatgatagtttttatta 129  Q
    |||||| |||||| |||| ||||||||||||||||| ||| ||    ||||| || |||||||| |||||||||||| || ||||| |||||||||||||    
T  50653660 gaacctacaatttaaaccataactaataagtatatataaaaaataaaattgaatttctaaagtgcgaaaataattttcttaaagattatagtttttatta 50653561  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 27456858 - 27456821
Alignment:
Q  92 tgtgaaaataattttattgaagatgatagtttttatta 129  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  27456858 tgtgaaaataattttcttgaagatggtagtttttatta 27456821  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 133
Target Start/End: Original strand, 19020074 - 19020156
Alignment:
Q  50 ccctaactaataagtatataaaaagaaattgacttcctaaagtgtgaaaataattttattgaagatgatagtttttattatgtt 133  Q
    ||||||||||||||||||| |||| || |||| ||| |||||| ||||||||||||  ||||||||||||||||||||||||||    
T  19020074 ccctaactaataagtatatcaaaa-aatttgaattcataaagtttgaaaataatttgtttgaagatgatagtttttattatgtt 19020156  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 42066888 - 42066953
Alignment:
Q  64 tatataaaaagaaattgacttcctaaagtgtgaaaataattttattgaagatgatagtttttatta 129  Q
    |||||| ||| ||||||| || ||||||||||||||||||||| ||||||||||||||||||||||    
T  42066888 tatatataaaaaaattgaattgctaaagtgtgaaaataattttcttgaagatgatagtttttatta 42066953  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 58647 - 58709
Alignment:
Q  56 ctaataagtatataaaaagaaattgacttcctaaagtgtgaaaataattttattgaagatgata 119  Q
    ||||||||||||| |||| |||| || |||||||||||||||||||||||| ||||||||||||    
T  58647 ctaataagtatattaaaaaaaat-gaattcctaaagtgtgaaaataattttcttgaagatgata 58709  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 6132958 - 6132896
Alignment:
Q  65 atataaaaagaaattgacttcctaaagtgtgaaaataattttattgaagatgatagtttttatta 129  Q
    |||||||||||  |||| |||||||||||||||||||||||| || ||||||||| |||||||||    
T  6132958 atataaaaaga--ttgaattcctaaagtgtgaaaataattttcttaaagatgataatttttatta 6132896  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 5912209 - 5912259
Alignment:
Q  83 ttcctaaagtgtgaaaataattttattgaagatgatagtttttattatgtt 133  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  5912209 ttcctaaagtgtgaaaataattttcttgaagattatagtttttattatgtt 5912259  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 33023944 - 33023984
Alignment:
Q  89 aagtgtgaaaataattttattgaagatgatagtttttatta 129  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  33023944 aagtgtgaaaataattttcttgaagatgatagtttttatta 33023984  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 35585094 - 35585051
Alignment:
Q  86 ctaaagtgtgaaaataattttattgaagatgatagtttttatta 129  Q
    ||||||||||||||||||||| ||  ||||||||||||||||||    
T  35585094 ctaaagtgtgaaaataattttctttgagatgatagtttttatta 35585051  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 44942119 - 44942182
Alignment:
Q  56 ctaataagtatataaaaagaaattgacttcctaaagtgtgaaaataattttattgaagatgata 119  Q
    ||||| |||||||| ||| ||||||| |||||||||||  |||||| |||| ||||||||||||    
T  44942119 ctaattagtatatataaaaaaattgaattcctaaagtgataaaatagttttcttgaagatgata 44942182  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 42962696 - 42962767
Alignment:
Q  53 taactaataagtatataaaaagaaattgacttcctaaagtgtgaaaataattttattgaagatgatagttttta 126  Q
    |||||||||| ||||||||||  |||| | ||| |||||||||||||||||||  |||||  ||||||||||||    
T  42962696 taactaataaatatataaaaa--aattaaattcttaaagtgtgaaaataatttctttgaatgtgatagttttta 42962767  T

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