View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0287_low_2 (Length: 426)
Name: NF0287_low_2
Description: NF0287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0287_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 4 - 398
Target Start/End: Complemental strand, 2489553 - 2489159
Alignment:
| Q |
4 |
atgtcgaaaaatattaccccaatttcatttgctgggattacttcaggtcttattcgcttctcaaactcattatctggaacttcctgcaagtgaagagatt |
103 |
Q |
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| T |
2489553 |
atgtcggagaatgttaccccaatttcatttgctgggattacttcaggtcttattcgcttctcaaactcattatcaggaacttcctgcaagtgaagagatt |
2489454 |
T |
|
| Q |
104 |
gtgttgtgtttgaataagccacttgcggtatgatttcaacactattaaaattaaattgtaatatatctaataattagaaaacagagaaggcttacagctt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2489453 |
gtgttgtgtttgaataagccacttgcggtatgatttcaacactattaaaattaaattgtaatatatctaacaattagaaaacagagaaggcttacagctt |
2489354 |
T |
|
| Q |
204 |
tggatgcaggaactgaattttcaccatcagttttgcgcactgaagttggtatttctgcttcagtctttacagcaggagcaggactttcagtctttccttc |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2489353 |
tggatgcaggaactgaattttcaccatcagttttgcgcactgaagttggtatttctgcttcagtctttacagcaggtgcaggactttcagtctttccttc |
2489254 |
T |
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| Q |
304 |
tggtttcacagcagctccttcctcttttttctttattcgggatgatacatacagagacaaaggacacacagattatatcagtacctggtagatat |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489253 |
tggtttcacagcagctccttcctcttttttctttattcgggatgatacatacagagacaaaggacacacagattatatcagtacctggtagatat |
2489159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 41591452 - 41591529
Alignment:
| Q |
23 |
caatttcatttgctgggattacttcaggtcttattcgcttctcaaactcattatc---tggaacttcctgcaagtgaa |
97 |
Q |
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|||| ||||||||||| || |||||||| ||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
41591452 |
caatctcatttgctggtataacttcaggccttattcgcttctcaaattcattatcaggaggaacttcctgcaagtgaa |
41591529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 11094856 - 11094921
Alignment:
| Q |
28 |
tcatttgctgggattacttcaggtcttattcgcttctcaaactcattatctggaacttcctgcaag |
93 |
Q |
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|||||||| ||||| ||||||||||| ||||||||||| || || || || ||||||||||||||| |
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| T |
11094856 |
tcatttgcagggataacttcaggtctaattcgcttctcgaattcgttgtcgggaacttcctgcaag |
11094921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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