View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0287_low_20 (Length: 267)
Name: NF0287_low_20
Description: NF0287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0287_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 42708291 - 42708029
Alignment:
| Q |
1 |
catgtaacggatacagagaatctaccaaataaaagtatatgaaagagtaagaagttttgtattgctttccattcttctcttttctctttattttatagct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42708291 |
catgtaacggatacagagaatctaccaaataaaagtatatgaaagagtaagaagttttgtattgctttccattcttctcttttctctttattttatagct |
42708192 |
T |
|
| Q |
101 |
ctaaatcactcccaaagaccagaaacatgtttagaccaacttaaagcgttaaaacatgcacaactcaccggaagaagcattaaaactccaattggaataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42708191 |
ctaaatcactcccaaagaccagaaacatgtttagaccaacttaaagcgttaaaacatgcacaactcaccggaagaagcattaaaactccaattggaataa |
42708092 |
T |
|
| Q |
201 |
ctgaagccatgtcagtcaaggttctcttaagtgtcttcttctctttctcggtcaattcatctc |
263 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42708091 |
ctgaagccatgtcagtcaaggttctcctaagtgtcttcttctctttctcggtcaattcatctc |
42708029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 261
Target Start/End: Original strand, 25708994 - 25709094
Alignment:
| Q |
161 |
caactcaccggaagaagcattaaaactccaattggaataactgaagccatgtcagtcaaggttctcttaagtgtcttcttctctttctcggtcaattcat |
260 |
Q |
| |
|
||||| || |||| ||||||||||| || || |||| |||||||||||||||||| |||||||| ||||||| |||||||| ||||| |||||||||| |
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| T |
25708994 |
caacttacaggaataagcattaaaatgccgataggaacaactgaagccatgtcagttaaggttcttttaagtgctttcttctccttctcagtcaattcat |
25709093 |
T |
|
| Q |
261 |
c |
261 |
Q |
| |
|
| |
|
|
| T |
25709094 |
c |
25709094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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