View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0287_low_23 (Length: 249)
Name: NF0287_low_23
Description: NF0287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0287_low_23 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 2489787 - 2489550
Alignment:
| Q |
12 |
ttctcgtcttcaccaaaccatttagaagtgatggtagacatggatacattaatgaaacttgctccagcctcgtttgcaatggcctttgccagcattgttt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489787 |
ttctcgtcttcaccaaaccatttagaagtgatggtagacatggatacattaatgaaacttgctccagcctcgtttgcaatggcctttgccagcattgttt |
2489688 |
T |
|
| Q |
112 |
ttcctgttccaggtggcccaaatagcaatattcctctacaaggctttagaaggcctccttcaaaaaggtctggccttcgaaggggaagcattactagttc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489687 |
ttcctgttccaggtggcccaaatagcaatattcctctacaaggctttagaaggcctccttcaaaaaggtctggccttcgaaggggaagcattactagttc |
2489588 |
T |
|
| Q |
212 |
ttgaagtgaatctttagtctcgtctaaggcaccaatgt |
249 |
Q |
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| T |
2489587 |
ttgaagtgaatctttagtctcgtctaaggcaccaatgt |
2489550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 12 - 247
Target Start/End: Original strand, 41591199 - 41591434
Alignment:
| Q |
12 |
ttctcgtcttcaccaaaccatttagaagtgatggtagacatggatacattaatgaaacttgctccagcctcgtttgcaatggcctttgccagcattgttt |
111 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| ||||||||||||| |
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| T |
41591199 |
ttctcatcttcaccaaaccatttagaagtgatggtagacatggacacattaatgaaacttgctccagcttcctttgcaatggccttcgccagcattgttt |
41591298 |
T |
|
| Q |
112 |
ttcctgttccaggtggcccaaatagcaatattcctctacaaggctttagaaggcctccttcaaaaaggtctggccttcgaaggggaagcattactagttc |
211 |
Q |
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| T |
41591299 |
tcccagttccaggaggcccaaatagcaatattccccgacatggttttagaagtcctccagtgaaaaggtctggccttcgaagaggaagcattactagttc |
41591398 |
T |
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| Q |
212 |
ttgaagtgaatctttagtctcgtctaaggcaccaat |
247 |
Q |
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| T |
41591399 |
ttgaagtgattcttttgtttcttctaaggcaccaat |
41591434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 11094604 - 11094830
Alignment:
| Q |
18 |
tcttcaccaaaccatttagaagtgatggtagacatggatacattaatgaaacttgctccagcctcgtttgcaatggcctttgccagcattgtttttcctg |
117 |
Q |
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||||| || |||||||| |||||||| || ||||| || || ||||||||||||||||| || || || ||||| |||||||| |||||||||||||| | |
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| T |
11094604 |
tcttctccgaaccattttgaagtgatcgtggacatcgagacgttaatgaaacttgctcctgcttcattcgcaatcgcctttgctagcattgtttttccgg |
11094703 |
T |
|
| Q |
118 |
ttccaggtggcccaaatagcaatattcctctacaaggctttagaaggcctccttcaaaaaggtctggccttcgaaggggaagcattactagttcttgaag |
217 |
Q |
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| T |
11094704 |
taccaggtggaccgaaaagtaatatacctctacatggctttagaagtccacctttgaaaaggtctggtcttctaaggggaagcattactagctcttgaag |
11094803 |
T |
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| Q |
218 |
tgaatctttagtctcgtctaaggcacc |
244 |
Q |
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|| ||||| |||| ||||| ||||| |
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| T |
11094804 |
cgattcttttatctcatctaatgcacc |
11094830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 145
Target Start/End: Original strand, 39697027 - 39697136
Alignment:
| Q |
36 |
gaagtgatggtagacatggatacattaatgaaacttgctccagcctcgtttgcaatggcctttgccagcattgtttttcctgttccaggtggcccaaata |
135 |
Q |
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||||| ||| |||||||||| | ||||||||| |||||||||| ||| |||| | |||||||| |||||||||||||| || ||||| || ||||| | |
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| T |
39697027 |
gaagtaatgctagacatggagatgttaatgaaatttgctccagcttcggttgctaccgcctttgcaagcattgtttttcccgtgccaggggggccaaaaa |
39697126 |
T |
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| Q |
136 |
gcaatattcc |
145 |
Q |
| |
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| T |
39697127 |
gcaatattcc |
39697136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 162
Target Start/End: Complemental strand, 44926730 - 44926625
Alignment:
| Q |
57 |
acattaatgaaacttgctccagcctcgtttgcaatggcctttgccagcattgtttttcctgttccaggtggcccaaatagcaatattcctctacaaggct |
156 |
Q |
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||||| ||||||||||||||||| || |||||||| |||||||| |||||||| |||||||| ||||| || ||||| || |||| ||| |||| |||| |
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| T |
44926730 |
acattgatgaaacttgctccagcttcatttgcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaagtaatacacctttacatggct |
44926631 |
T |
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| Q |
157 |
ttagaa |
162 |
Q |
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| T |
44926630 |
tcagaa |
44926625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 162
Target Start/End: Complemental strand, 44935170 - 44935065
Alignment:
| Q |
57 |
acattaatgaaacttgctccagcctcgtttgcaatggcctttgccagcattgtttttcctgttccaggtggcccaaatagcaatattcctctacaaggct |
156 |
Q |
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||||| ||||||||||||||||| || |||||||| ||||| || |||||||| |||||||| ||||| || ||||| ||||||| ||| |||| |||| |
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| T |
44935170 |
acattgatgaaacttgctccagcttcatttgcaattgccttggcaagcattgtctttcctgtaccaggaggtccaaaaagcaatacacctttacatggct |
44935071 |
T |
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| Q |
157 |
ttagaa |
162 |
Q |
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| |||| |
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| T |
44935070 |
tcagaa |
44935065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 163
Target Start/End: Complemental strand, 45988556 - 45988450
Alignment:
| Q |
57 |
acattaatgaaacttgctccagcctcgtttgcaatggcctttgccagcattgtttttcctgttccaggtggcccaaatagcaatattcctctacaaggct |
156 |
Q |
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||||| |||||||||||||||| || || ||||| |||||||| |||||||| |||||||| ||||| || ||||| ||||||| ||| |||| |||| |
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| T |
45988556 |
acattgatgaaacttgctccagattcattagcaattgcctttgcgagcattgtctttcctgtaccaggaggtccaaaaagcaatacacctttacatggct |
45988457 |
T |
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| Q |
157 |
ttagaag |
163 |
Q |
| |
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| T |
45988456 |
tcagaag |
45988450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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