View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0287_low_24 (Length: 248)
Name: NF0287_low_24
Description: NF0287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0287_low_24
Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 28 - 245
Target Start/End: Original strand, 594382 - 594599
Alignment:
Q
28
cccagggaggaagcatcgattgttctcaaggtagttgatgcctatcttgtgtcaaacctagaagcttatgctggaagtgatttttatgaggctgctttgc
127
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
T
594382
cccagggaggaagcatcgattgttctcaaggtagttgatgcctatcttgtgtcaaacctagaagcttatgttggaagtgatctttatgaggctgctttgc
594481
T
Q
128
ataattacaattgaagtcgtgattgttgtattatttcgttgatcgattttgaaattcgtactgcaggaatgtgataagtttatgttaatgagaaaaagca
227
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
594482
ataattacaattgaagtcgtgattgttgtattatttcgttgatcgattttgaaattcgtactgcaggaatgtgataagtttatgttaatgagaaaaagca
594581
T
Q
228
ccaagtttgatgttgcca
245
Q
||||||||||||||||||
T
594582
ccaagtttgatgttgcca
594599
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 138 - 245
Target Start/End: Original strand, 37550722 - 37550829
Alignment:
Q
138
ttgaagtcgtgattgttgtattatttcgttgatcgattttgaaattcgtactgcaggaatgtgataagtttatgttaatgagaaaaagcaccaagtttga
237
Q
|||||||||||||||||||||| || |||||| ||||| ||||||| | ||||||| | |||| |||||||||| | ||||||||||||| ||||||||
T
37550722
ttgaagtcgtgattgttgtatttatttgttgattgatttcgaaattcatgctgcaggcacgtgagaagtttatgtcattgagaaaaagcactaagtttga
37550821
T
Q
238
tgttgcca
245
Q
|| |||||
T
37550822
tgatgcca
37550829
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 138 - 245
Target Start/End: Original strand, 37653551 - 37653658
Alignment:
Q
138
ttgaagtcgtgattgttgtattatttcgttgatcgattttgaaattcgtactgcaggaatgtgataagtttatgttaatgagaaaaagcaccaagtttga
237
Q
|||||||||||||||||||||| || |||||| ||||| ||||||| | ||||||| | |||| |||||||||| | ||||||||||||| ||||||||
T
37653551
ttgaagtcgtgattgttgtatttatttgttgattgatttcgaaattcatgctgcaggcacgtgagaagtttatgtcattgagaaaaagcactaagtttga
37653650
T
Q
238
tgttgcca
245
Q
|| |||||
T
37653651
tgatgcca
37653658
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 245
Target Start/End: Original strand, 39925810 - 39925917
Alignment:
Q
138
ttgaagtcgtgattgttgtattatttcgttgatcgattttgaaattcgtactgcaggaatgtgataagtttatgttaatgagaaaaagcaccaagtttga
237
Q
|||||||| ||||||||||||| ||||||||| ||||||||||| | | ||||| | | | |||||||||| | ||||||||| ||||||||||||
T
39925810
ttgaagtcatgattgttgtatttgttcgttgattgattttgaaatccatgttgcagacacctaagaagtttatgtcattgagaaaaaacaccaagtttga
39925909
T
Q
238
tgttgcca
245
Q
|| |||||
T
39925910
tgatgcca
39925917
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 39915707 - 39915631
Alignment:
Q
163
tcgttgatcgattttgaaattcgtactgcaggaatgtgataagtttatgttaatgagaaaaagcaccaagtttgatg
239
Q
|||||||| ||||||||||||| | |||||| | |||| |||||||| | | ||||||||||||| ||||||||||
T
39915707
tcgttgattgattttgaaattcatgttgcaggcacgtgagaagtttatttcattgagaaaaagcactaagtttgatg
39915631
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 45085054 - 45085100
Alignment:
Q
198
gtgataagtttatgttaatgagaaaaagcaccaagtttgatgttgcc
244
Q
|||| |||||||||| | |||||||||||||||||||||||||||||
T
45085054
gtgagaagtttatgtcattgagaaaaagcaccaagtttgatgttgcc
45085100
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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