View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0287_low_25 (Length: 222)
Name: NF0287_low_25
Description: NF0287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0287_low_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 36708270 - 36708331
Alignment:
| Q |
64 |
tattacgaatactcactttctaccaccgactctcttattgagtagaatagaacctgcatttt |
125 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36708270 |
tattacgaatactcactttctatcaccgactctcttattgagtggaatagaacctgcatttt |
36708331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 36708136 - 36708182
Alignment:
| Q |
1 |
ataaggcttatcaatttaattcaaccaaaacagttatttgctgtctt |
47 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36708136 |
ataaggcttatcaatttaattcaaccaaaacagttatttgttgtctt |
36708182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 597 times since January 2019
Visitors: 2567