View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0287_low_3 (Length: 410)
Name: NF0287_low_3
Description: NF0287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0287_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 26650265 - 26650111
Alignment:
| Q |
18 |
catgaaaaatgtaaaactagacactttatttaatgaaagaacatgagtaggttggacaacaagaattgtcatgagggtaaatttggtattttagtttaaa |
117 |
Q |
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| T |
26650265 |
catgaaaaatataaaactaggcactttatttaatgaaagaacatgagtaggttggacaacaagaattgtcatgagggtaaatttggtattttagtttaaa |
26650166 |
T |
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| Q |
118 |
ttaaataacaatgatcacattccttaaaaagtgtgaaatggtcaattttgcttat |
172 |
Q |
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| T |
26650165 |
ttaaataacaatgatcacattccttaaaaagtgtgaaatggtcaattttgcttat |
26650111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 39 - 172
Target Start/End: Original strand, 48079671 - 48079805
Alignment:
| Q |
39 |
cactttatttaatgaaagaacatgagta-ggttggacaacaagaattgtcatgagggtaaatttggtattttagtttaaattaaataacaatgatcacat |
137 |
Q |
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| T |
48079671 |
cactttatttaatgaaagaacatgaatacggttggccaacaagaattgtcatgagggcaaattaggccttttagcttaaattaaataacaatgaccacat |
48079770 |
T |
|
| Q |
138 |
tccttaaaaagtgtgaaatggtcaattttgcttat |
172 |
Q |
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| T |
48079771 |
tccttaaagagtgtgaaatagtcaattttgcttat |
48079805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 22 - 172
Target Start/End: Original strand, 43873635 - 43873785
Alignment:
| Q |
22 |
aaaaatgtaaaactagacactttatttaatgaaagaacatgagtaggttggacaacaagaattgtcatgagggtaaatttggtattttagtttaaattaa |
121 |
Q |
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| T |
43873635 |
aaaaatgtaaaactaggcactttatttaatgaaagaacatgagtaggttggacaacaagaattgtcatgagggcaaatttggtattttagtttaaattaa |
43873734 |
T |
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| Q |
122 |
ataacaatgatcacattccttaaaaagtgtgaaatggtcaattttgcttat |
172 |
Q |
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| T |
43873735 |
ataacaatgatcacatttcttaaaaagtgtgaaatggtcaattttgcttat |
43873785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 8e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 3055894 - 3056048
Alignment:
| Q |
18 |
catgaaaaatgtaaaactagacactttatttaatgaaagaacatgagtaggttggacaacaagaattgtcatgagggtaaatttggtattttagtttaaa |
117 |
Q |
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|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||| |
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| T |
3055894 |
catgaaaaatgtaaaactaggcactttatttaatgaaagaacatgagtaggttggacaacaagaagtgtcatgggggcaaatttggtattttagtttaaa |
3055993 |
T |
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| Q |
118 |
ttaaataacaatgatcacattccttaaaaagtgtgaaatggtcaattttgcttat |
172 |
Q |
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|
| T |
3055994 |
ttaaataacaataatcacattccttaaaaagtgtgaaatgatcaattttgcttat |
3056048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 32379117 - 32379272
Alignment:
| Q |
18 |
catgaaaaatgtaaaactagacactttatttaatgaaagaacatgagta-ggttggacaacaagaattgtcatgagggtaaatttggtattttagtttaa |
116 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||| || |||||| ||||||||||| ||||| || ||||| | ||||||| |||| |
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| T |
32379117 |
catgaaaaatgtaaaattaggcactttatttaatgaaagaacatgaatacggttgggaaacaagaattgccatgacggcaaattagacattttagcttaa |
32379216 |
T |
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| Q |
117 |
attaaataacaatgatcacattccttaaaaagtgtgaaatggtcaattttgcttat |
172 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
32379217 |
attaaataacaatgaccacattccttaaaaagtgtgaaatgatcaattttgcttat |
32379272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 22 - 145
Target Start/End: Complemental strand, 50745471 - 50745348
Alignment:
| Q |
22 |
aaaaatgtaaaactagacactttatttaatgaaagaacatgagtaggttggacaacaagaattgtcatgagggtaaatttggtattttagtttaaattaa |
121 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||| |
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| T |
50745471 |
aaaaatgtaaaactaggcactttatttaatgaaagaacatgagtaggttggacaacaagaattgtcatgagggcaaatttagtattttaatttaaattaa |
50745372 |
T |
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| Q |
122 |
ataacaatgatcacattccttaaa |
145 |
Q |
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|||||| ||||||||||| ||||| |
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| T |
50745371 |
ataacattgatcacattctttaaa |
50745348 |
T |
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