View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0287_low_6 (Length: 372)
Name: NF0287_low_6
Description: NF0287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0287_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 15 - 344
Target Start/End: Original strand, 37564735 - 37565064
Alignment:
| Q |
15 |
aataagcaacaaaggtttatgtatgtacaagttaaagagatactgctaatttcctccaacagaagcaggtaaaccagtctattgaagcaacctgaagaca |
114 |
Q |
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| T |
37564735 |
aataagcaacaaatgtttatgtatgtacaagttaaagagatactgctaatttcctccaacagaagcaggtaaaccagtctattgaagcaacctgaagata |
37564834 |
T |
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| Q |
115 |
tttattgaagccattgttggcatgtgttttgatcaagttccttaaccataactgagatccacaataacaactacaagtcaaccatgtctctcatgtcaat |
214 |
Q |
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| T |
37564835 |
tttattgaagccattgttggcatgtgttttgatcaagttccttaaccataactgagatccacaataacaactacaagtcaaccatgtctctcatgtcaat |
37564934 |
T |
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| Q |
215 |
tgtctaacttaaacttcctagtgcatcaattttgcaacaataaaaaattcctcacaaaaagcacatcactgtttagaataagccagactcttaacagatt |
314 |
Q |
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| T |
37564935 |
tgtctaacttaaacctcctagtgcatcaattttgcaacaataaaaaattcctcacaaaaagcacatcactgtttagaataagccagactcttaacagatt |
37565034 |
T |
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| Q |
315 |
tgagcctttactgtcttaagacatttccat |
344 |
Q |
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| T |
37565035 |
tgagcctttactgtcttaagacattgccat |
37565064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 31 - 187
Target Start/End: Complemental strand, 37162330 - 37162185
Alignment:
| Q |
31 |
ttatgtatgtacaagttaaagagatactgctaatttcctccaacagaagcaggtaaaccagtctattgaagcaacctgaagacatttattgaagccattg |
130 |
Q |
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| T |
37162330 |
ttatgtatttgcaagttaaagagatactgctattttcccttaacagaagcaggt--------ctattgaagtaacttgaacacatttattgaagcca--- |
37162242 |
T |
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| Q |
131 |
ttggcatgtgttttgatcaagttccttaaccataactgagatccacaataacaacta |
187 |
Q |
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| T |
37162241 |
ttggcctgtgtttcattcaagttccttatccatgactgatatccataataaaaacta |
37162185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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