View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0287_low_8 (Length: 352)
Name: NF0287_low_8
Description: NF0287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0287_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 40991678 - 40991941
Alignment:
| Q |
1 |
accccacttagtgagataagacttggctgttgttgtcgttgatattgtatggaattggaagttcgtgaactgttttgtgacaacaagtacatgataaaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40991678 |
accccacttagtgagataagacttggctgttgttgtcgttgatgttgtatggaattggaagttcgtgaactgttttgtgacaacaagtacatgataaaaa |
40991777 |
T |
|
| Q |
101 |
atggaacaccagctcttagttctctgatgattttccttttctatatcccttccctggatcaaactatggaactctgtatagtttaagttgttcatatatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40991778 |
atggaacaccagctcttagttctctgatgatttgccttttctatatcccttccctggatcaaactatggaactctgtatagtttaagttgttcatatatg |
40991877 |
T |
|
| Q |
201 |
acatgtagaggttgaatgatgctttaaattttggattttctggtccaaatgacaatattggatc |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40991878 |
acatgtagaggttgaatgatgctttaaattttggattttctggtccaaatgacaatattggatc |
40991941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 4653499 - 4653539
Alignment:
| Q |
1 |
accccacttagtgagataagacttggctgttgttgtcgttg |
41 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
4653499 |
accccacttagtgagataagacttggttgttgttgttgttg |
4653539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 35914636 - 35914601
Alignment:
| Q |
1 |
accccacttagtgagataagacttggctgttgttgt |
36 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
35914636 |
accccacttagtgagataagacttggttgttgttgt |
35914601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 4029369 - 4029409
Alignment:
| Q |
1 |
accccacttagtgagataagacttggctgttgttgtcgttg |
41 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||| |||| |
|
|
| T |
4029369 |
accccacttagtgggataagacttggttgttgttgttgttg |
4029409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 7922072 - 7922112
Alignment:
| Q |
1 |
accccacttagtgagataagacttggctgttgttgtcgttg |
41 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||| |||| |
|
|
| T |
7922072 |
accccacttagtgggataagacttggttgttgttgttgttg |
7922112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 28090729 - 28090689
Alignment:
| Q |
1 |
accccacttagtgagataagacttggctgttgttgtcgttg |
41 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||| |||| |
|
|
| T |
28090729 |
accccacttagtgggataagacttggttgttgttgttgttg |
28090689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 265 times since January 2019
Visitors: 2563