View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0287_low_9 (Length: 343)
Name: NF0287_low_9
Description: NF0287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0287_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 98 - 333
Target Start/End: Original strand, 40115373 - 40115608
Alignment:
| Q |
98 |
catccttatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatcagnnnnnnnttcaatggatataaggttagttttgca |
197 |
Q |
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| T |
40115373 |
catccttatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatcagaaaaaaattcaatggatatagggttagttttgca |
40115472 |
T |
|
| Q |
198 |
taaatgtgagacagacaataacttgcaagtgatattcggaacatgaagaactttatgaaggtggagagtgcttcttttcaatggtaaaattatcttacca |
297 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40115473 |
taaatgtgagacagacaataacttgcaagtgatatttggaacatgaagaactttatgaaggtggagagtgcttcttttcaatggtaaaattatcttacca |
40115572 |
T |
|
| Q |
298 |
gtatgagtaatgggaagtccagtaccatcacctatg |
333 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
40115573 |
gtatgagtaatgggaagtccagtaccatcacctatg |
40115608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 193
Target Start/End: Original strand, 9007211 - 9007300
Alignment:
| Q |
104 |
tatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatcagnnnnnnnttcaatggatataaggttagttt |
193 |
Q |
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|||||| |||||| || ||||||||| |||||||||||||||||||||||||| |||||| ||||||||| ||| ||||||||| |
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| T |
9007211 |
tatgcagtcctttgaggagaggctcctttgtcttcaaatccttcaccaaaaaacaatcagaaaaaaattcaatggaaatagggttagttt |
9007300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 42360938 - 42361002
Alignment:
| Q |
98 |
catccttatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatca |
162 |
Q |
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| T |
42360938 |
catccttatgcattccttttataagaggagcccttgtcttcaagtcctttaccaagtaataatca |
42361002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 98 - 260
Target Start/End: Complemental strand, 3017262 - 3017100
Alignment:
| Q |
98 |
catccttatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatcagnnnnnnnttcaatggatataaggttagttttgca |
197 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||| ||||| ||||| |||||||| |||||| || || ||||||| ||||| |
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| T |
3017262 |
catccttatgcaatccttttagaagaggagcccttgtcttcaagtcctttaccaagtaataatcatgaaagaattcaatagaaattgggttagtcttgca |
3017163 |
T |
|
| Q |
198 |
taaatgtgagacagacaataacttgcaagtgatattcggaacatgaagaactttatgaaggtg |
260 |
Q |
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||| | |||||||| ||||| ||||||| |||| || |||||||| ||||| ||||||| |
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|
| T |
3017162 |
taagttggagacagataataatttgcaagaaatatgagggacatgaaggactttgggaaggtg |
3017100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 128 - 163
Target Start/End: Original strand, 9038424 - 9038459
Alignment:
| Q |
128 |
cccttgtcttcaaatccttcaccaaaaaataatcag |
163 |
Q |
| |
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||||||||||||||||||||||||||||| |||||| |
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| T |
9038424 |
cccttgtcttcaaatccttcaccaaaaaaaaatcag |
9038459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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