View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0288-INSERTION-3 (Length: 549)
Name: NF0288-INSERTION-3
Description: NF0288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0288-INSERTION-3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 8 - 549
Target Start/End: Original strand, 47838585 - 47839124
Alignment:
| Q |
8 |
attgtcataccactttatgaatcatttcatgaaaatatagtagctagaagtggatatcttgttaacttgtgcatcaagttatctcataagctgtatatca |
107 |
Q |
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| T |
47838585 |
attgtcataccactttatgaatcatttcatgaaaatatagtagctagaagtggatatcttgttaacttgtgcatcaagttatctcataagctgtatatca |
47838684 |
T |
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| Q |
108 |
catttgtctttgttcaagaaatcttttcttggagctccttaatatattttagaacacgaatacattctaaagtcctgcaacgagagattatgattataaa |
207 |
Q |
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| T |
47838685 |
catttgtctttgttcaagaaatcttttcttggagctccttaatatattttagaacacgaatacattctaaagtcctgcaatgagagattatgattataaa |
47838784 |
T |
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| Q |
208 |
attcagctacattgattacattttaagatctttttggcaactatagaaattagaaaagttgcatggcttgattcgtaagtagaatctgattatttggttt |
307 |
Q |
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| T |
47838785 |
attcagctacattgattacattttaagatctttttggcaactatagaaattagaaaagttgcatggcttgattcgtaagtagaatctgattatttggttt |
47838884 |
T |
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| Q |
308 |
gttatgtgacactctctgcattaaaatcacccaagtgaagaagatttaaaagagtgatccaaaataaataagttgattaagtaacagtgttttagttgtt |
407 |
Q |
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| T |
47838885 |
gttatgtgacactctctgcattaaaattacccaagtgaagaggatttaaaagagtgatccaaaataaataagttgattaagtaacagtgttttagttgtt |
47838984 |
T |
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| Q |
408 |
tctagtgtaatactatacttttaatgcattgattgtattaatatacgaatgtattgaccgaatatagttgatcatcccaagagtttgacccgaatataga |
507 |
Q |
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| T |
47838985 |
tctagtgtaatactatacttttaatgcattgattgtattaatatacgaatgtattgaccgaatatagttgatcatccaaagagtttga-ccgaatataga |
47839083 |
T |
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| Q |
508 |
ccagtttgtctagcgacctgcatgtataacgattataccgaa |
549 |
Q |
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| T |
47839084 |
ccagtttgtctagcgagctgcatgtataa-gattataccgaa |
47839124 |
T |
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