View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0288-INSERTION-9 (Length: 362)
Name: NF0288-INSERTION-9
Description: NF0288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0288-INSERTION-9 |
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| [»] scaffold0024 (2 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 7 - 361
Target Start/End: Original strand, 66144 - 66485
Alignment:
| Q |
7 |
aaagacgaatctattcatgattaaaatggaaactggtaagtagattaggttaatggctgatttggaactcggtccatgtgtgatatgaggtgtgtttggg |
106 |
Q |
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| T |
66144 |
aaagacgaatctattcatgattaaaatggaaactggtaagtagattaggttaatggctgatttggaactcggtccatgtgtgatatga------------ |
66231 |
T |
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| Q |
107 |
taaacaacttaaataagcgtttattgaatagacattcatcgcaaaagatctcatgtataagttgtttctaggattgaagagcttttgaagctaaatttta |
206 |
Q |
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| T |
66232 |
--aacaacttaaataagcgtttattgaatagacattcatcgcataagagctcatgtataagttgtttctaggattgaagagcttttgaagctaaatttta |
66329 |
T |
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| Q |
207 |
cacaagctctgataatctacttgtgtgagctagcataaggag---tttatgtaaaccagattcataagcttaaataaactcagaataagttcctccaaac |
303 |
Q |
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| T |
66330 |
cacaagctctgacaagctacttctatgagctagtataaggagtaatttatgtaaacaagatttataagcttaaataaactcaaaataagttcttccaaac |
66429 |
T |
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| Q |
304 |
acaactcatgatatattattcatcaatttactatattccgtgtttggtgtcctcttgc |
361 |
Q |
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| T |
66430 |
acaactcatgatatattattcatcaatttac--tattcagtgtttggtgtccttttgc |
66485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 361
Target Start/End: Original strand, 31164 - 31517
Alignment:
| Q |
13 |
gaatctattcatgattaaaatggaaactggtaagtagattaggttaatggctgatttggaactcggtccatgtgtgatatgaggtgtgtttgggtaaaca |
112 |
Q |
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| T |
31164 |
gaatctattcatgattaaaatggaaactagtaagtagattaggctaatgactgatttggaactcagtccatgtgtgatatgaggtgtgtttcggcaaaca |
31263 |
T |
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| Q |
113 |
acttaaataagcgtttattgaatagacattcatcgcaaaagatctcatgtataagttgtttctaggattgaagagcttttgaagctaaattttacacaag |
212 |
Q |
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| T |
31264 |
acttaaataagcgtttattgaaccgacatttattgcgtaagagctcatgtataagtcgtttctaggattgaagagcttttgaagccgaatttcgcacaag |
31363 |
T |
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| Q |
213 |
ctctgataatctacttgtgtgagctagcataaggagtttatgtaaaccagatt-------cataagcttaaataaactcagaataagttcctccaaacac |
305 |
Q |
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| T |
31364 |
ctctgataagcagtatctatgagctagtataaggagtttatgtaaacaagatttatatgctataagcttaaataaactcaaaataagttcttccaaacac |
31463 |
T |
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| Q |
306 |
aactcatgatatattattcatcaatttactatattccgtgtttggtgtcctcttgc |
361 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||| ||||||| |||| |
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| T |
31464 |
aactcatgatatattattcatcaatttac--tattcagtgtttagtgtccttttgc |
31517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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