View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0288_high_10 (Length: 307)

Name: NF0288_high_10
Description: NF0288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0288_high_10
NF0288_high_10
[»] scaffold0003 (1 HSPs)
scaffold0003 (72-260)||(295985-296173)
[»] chr8 (2 HSPs)
chr8 (72-260)||(20754537-20754725)
chr8 (124-256)||(22614140-22614272)
[»] chr6 (2 HSPs)
chr6 (72-260)||(28274389-28274577)
chr6 (72-260)||(28353139-28353327)
[»] chr4 (2 HSPs)
chr4 (72-260)||(27266083-27266271)
chr4 (72-260)||(29635490-29635678)
[»] chr3 (2 HSPs)
chr3 (124-256)||(42730892-42731024)
chr3 (170-248)||(50059896-50059974)


Alignment Details
Target: scaffold0003 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 72 - 260
Target Start/End: Original strand, 295985 - 296173
Alignment:
Q  72 gagatgaatgctttgaacaaaaataacacttggtgtatcactgatctaccttatgacaaaaaggcagtaggatgtaagtgggtctttacactgaagtgca 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  295985 gagatgaatgctttgaacaaaaataacacttggtgtatcactgatctaccttatgacaaaaaggcagtaggatgtaagtgggtctttacagtgaagtgca 296084  T
Q  172 aggctgatggaagtgtggaaagatacaaagcaagattagtagcaaaaggattcactcaaactcatggtatagattatcaggagactttt 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  296085 aggctgatggaagtgtggaaagatacaaagcaagattagtagcaaaaggattcactcaaactcatggtatagattatcaggagactttt 296173  T

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Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 72 - 260
Target Start/End: Complemental strand, 20754725 - 20754537
Alignment:
Q  72 gagatgaatgctttgaacaaaaataacacttggtgtatcactgatctaccttatgacaaaaaggcagtaggatgtaagtgggtctttacactgaagtgca 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  20754725 gagatgaatgctttgaacaaaaataacacttggtgtatcactgatctaccttatgacaaaaaggcagtaggatgtaagtgggtctttacagtgaagtgca 20754626  T
Q  172 aggctgatggaagtgtggaaagatacaaagcaagattagtagcaaaaggattcactcaaactcatggtatagattatcaggagactttt 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20754625 aggctgatggaagtgtggaaagatacaaagcaagattagtagcaaaaggattcactcaaactcatggtatagattatcaggagactttt 20754537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 256
Target Start/End: Original strand, 22614140 - 22614272
Alignment:
Q  124 atgacaaaaaggcagtaggatgtaagtgggtctttacactgaagtgcaaggctgatggaagtgtggaaagatacaaagcaagattagtagcaaaaggatt 223  Q
    |||||||||||   || || ||||||||||| |||||  | |||||||| || |||||||||||||| || ||||| || || |||||||| || |||||    
T  22614140 atgacaaaaagaaggtgggttgtaagtgggtttttaccatcaagtgcaaagcagatggaagtgtggagaggtacaaggctaggttagtagctaagggatt 22614239  T
Q  224 cactcaaactcatggtatagattatcaggagac 256  Q
     || |||||| |||||||||||||||| |||||    
T  22614240 tacccaaacttatggtatagattatcaagagac 22614272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 72 - 260
Target Start/End: Original strand, 28274389 - 28274577
Alignment:
Q  72 gagatgaatgctttgaacaaaaataacacttggtgtatcactgatctaccttatgacaaaaaggcagtaggatgtaagtgggtctttacactgaagtgca 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28274389 gagatgaatgctttgaacaaaaataacacttggtgtatcactgatctaccttatgacaaaaaggcagtaggatgtaagtgggtctttacagtgaagtgca 28274488  T
Q  172 aggctgatggaagtgtggaaagatacaaagcaagattagtagcaaaaggattcactcaaactcatggtatagattatcaggagactttt 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28274489 aggctgatggaagtgtggaaagatacaaagcaagattagtagcaaaaggattcactcaaactcatggtatagattatcaggagactttt 28274577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 72 - 260
Target Start/End: Original strand, 28353139 - 28353327
Alignment:
Q  72 gagatgaatgctttgaacaaaaataacacttggtgtatcactgatctaccttatgacaaaaaggcagtaggatgtaagtgggtctttacactgaagtgca 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28353139 gagatgaatgctttgaacaaaaataacacttggtgtatcactgatctaccttatgacaaaaaggcagtaggatgtaagtgggtctttacagtgaagtgca 28353238  T
Q  172 aggctgatggaagtgtggaaagatacaaagcaagattagtagcaaaaggattcactcaaactcatggtatagattatcaggagactttt 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28353239 aggctgatggaagtgtggaaagatacaaagcaagattagtagcaaaaggattcactcaaactcatggtatagattatcaggagactttt 28353327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 72 - 260
Target Start/End: Original strand, 27266083 - 27266271
Alignment:
Q  72 gagatgaatgctttgaacaaaaataacacttggtgtatcactgatctaccttatgacaaaaaggcagtaggatgtaagtgggtctttacactgaagtgca 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27266083 gagatgaatgctttgaacaaaaataacacttggtgtatcactgatctaccttatgacaaaaaggcagtaggatgtaagtgggtctttacagtgaagtgca 27266182  T
Q  172 aggctgatggaagtgtggaaagatacaaagcaagattagtagcaaaaggattcactcaaactcatggtatagattatcaggagactttt 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27266183 aggctgatggaagtgtggaaagatacaaagcaagattagtagcaaaaggattcactcaaactcatggtatagattatcaggagactttt 27266271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 72 - 260
Target Start/End: Complemental strand, 29635678 - 29635490
Alignment:
Q  72 gagatgaatgctttgaacaaaaataacacttggtgtatcactgatctaccttatgacaaaaaggcagtaggatgtaagtgggtctttacactgaagtgca 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29635678 gagatgaatgctttgaacaaaaataacacttggtgtatcactgatctaccttatgacaaaaaggcagtaggatgtaagtgggtctttacagtgaagtgca 29635579  T
Q  172 aggctgatggaagtgtggaaagatacaaagcaagattagtagcaaaaggattcactcaaactcatggtatagattatcaggagactttt 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29635578 aggctgatggaagtgtggaaagatacaaagcaagattagtagcaaaaggattcactcaaactcatggtatagattatcaggagactttt 29635490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 124 - 256
Target Start/End: Original strand, 42730892 - 42731024
Alignment:
Q  124 atgacaaaaaggcagtaggatgtaagtgggtctttacactgaagtgcaaggctgatggaagtgtggaaagatacaaagcaagattagtagcaaaaggatt 223  Q
    |||||||||||   || || ||||||||||| |||||  | |||||||| || |||||||||||||| |||||||| || || |||||||| || |||||    
T  42730892 atgacaaaaagaaggtgggttgtaagtgggtttttaccatcaagtgcaaagcagatggaagtgtggagagatacaaggctaggttagtagctaagggatt 42730991  T
Q  224 cactcaaactcatggtatagattatcaggagac 256  Q
     || |||||| |||||||||||||||| |||||    
T  42730992 tacccaaacttatggtatagattatcaagagac 42731024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 50059896 - 50059974
Alignment:
Q  170 caaggctgatggaagtgtggaaagatacaaagcaagattagtagcaaaaggattcactcaaactcatggtatagattat 248  Q
    |||||||||||||  | | ||||| ||||| |||||||| || || |||||||||||||||||| ||||  ||||||||    
T  50059896 caaggctgatggatctattgaaaggtacaaggcaagattggttgccaaaggattcactcaaacttatggagtagattat 50059974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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