View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0288_high_6 (Length: 409)
Name: NF0288_high_6
Description: NF0288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0288_high_6 |
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| [»] scaffold1033 (1 HSPs) |
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| [»] scaffold1029 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 314
Target Start/End: Original strand, 34812926 - 34813227
Alignment:
| Q |
13 |
aatatctccacctataaacaccgaatcaagtctgttttattatcaaagcattaattttcagaatggttagtacctagtacttagtagtactacttgacta |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34812926 |
aatatctccacctataaacaccgaatcaagtctgttttattatcaaagcattaattttcagaatggttagtacctagtacttagtagtactacttgacta |
34813025 |
T |
|
| Q |
113 |
taannnnnnnnnngaggtgaaccttggggagatccagttccatagagcggtttgcatagcccaaggtccggccctggcaggtagtgtactggtagagagt |
212 |
Q |
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||| ||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||| |
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| T |
34813026 |
taattttttttttgaggtgaaccttggggagacccagttccatagagcggtttgcataccctaaggtccggccctggcagatagtgtactggtagagagt |
34813125 |
T |
|
| Q |
213 |
ctagcaacaatcttttttggtcatgatgagttcaaatcctgtttgtgcctcaaacaatgcagagcacaaacagttaattactaatgcgttgcctcatgtt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
34813126 |
ctagcaacaatcttttttggtcatgatgagttcaaatcctgtttgtgcctcaaataatgcagagcacaaaaagttaattactaatgtgttgcctcatgtt |
34813225 |
T |
|
| Q |
313 |
cc |
314 |
Q |
| |
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|| |
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|
| T |
34813226 |
cc |
34813227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 39332586 - 39332640
Alignment:
| Q |
134 |
ccttggggagatccagttccatagagcggtttgcatagcccaaggtccggccctg |
188 |
Q |
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| T |
39332586 |
ccttggggatgtccagttccattgagcggtttgcacatcccaaggtccgaccctg |
39332640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 5892938 - 5892866
Alignment:
| Q |
13 |
aatatctccacctataaacaccgaatcaagtctgttttattatcaaagcattaattttcagaatggttagtac |
85 |
Q |
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||||| |||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
5892938 |
aatatttccacctataaacaccaaatcaagtctgttttattatcagagcactaattttcagaatggttagtac |
5892866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 28580474 - 28580403
Alignment:
| Q |
13 |
aatatctccacctataaacaccgaatcaagtctgttttattatcaaagcattaattttcagaatggttagta |
84 |
Q |
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|||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
28580474 |
aatatccccagctataaacactgaatcaagtctgttttattatcaaagcattaatttccagaatggtaagta |
28580403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 28575414 - 28575354
Alignment:
| Q |
24 |
ctataaacaccgaatcaagtctgttttattatcaaagcattaattttcagaatggttagta |
84 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
28575414 |
ctataaacaccgaatcaagtctgttttattatcaaagcattaatttctagaatggtaagta |
28575354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 28586606 - 28586547
Alignment:
| Q |
25 |
tataaacaccgaatcaagtctgttttattatcaaagcattaattttcagaatggttagta |
84 |
Q |
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||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| |||| |
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| T |
28586606 |
tataaacactgaatcaagtctgttttactatcaaagcattaatttccagaatggtaagta |
28586547 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 24072094 - 24072023
Alignment:
| Q |
13 |
aatatctccacctataaacaccgaatcaagtctgttttattatcaaagcattaattttcagaatggttagta |
84 |
Q |
| |
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|||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| |||| |
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| T |
24072094 |
aatatctccaactataaacattgaatcaagtctgttttactatcaaagcattaatttccagaatggtaagta |
24072023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 3034 - 3110
Alignment:
| Q |
13 |
aatatctccacctataaacaccgaatcaagtctgttttatt-----atcaaagcattaattttcagaatggttagta |
84 |
Q |
| |
|
|||||| ||| |||||||||| ||||||||||||||||| | |||||||||||||||| ||||||||| |||| |
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| T |
3034 |
aatatccccagctataaacactgaatcaagtctgttttaatttactatcaaagcattaatttccagaatggtaagta |
3110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 3034 - 3110
Alignment:
| Q |
13 |
aatatctccacctataaacaccgaatcaagtctgttttatt-----atcaaagcattaattttcagaatggttagta |
84 |
Q |
| |
|
|||||| ||| |||||||||| ||||||||||||||||| | |||||||||||||||| ||||||||| |||| |
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| T |
3034 |
aatatccccagctataaacactgaatcaagtctgttttaatttactatcaaagcattaatttccagaatggtaagta |
3110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 17322705 - 17322757
Alignment:
| Q |
133 |
accttggggagatccagttccatagagcggtttgcatagcccaaggtccggcc |
185 |
Q |
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|
|||||||||||| || ||||||| |||||||||||| | || ||||||||||| |
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| T |
17322705 |
accttggggagaccccgttccattgagcggtttgcacaccctaaggtccggcc |
17322757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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