View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0288_high_9 (Length: 315)
Name: NF0288_high_9
Description: NF0288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0288_high_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 33 - 315
Target Start/End: Original strand, 34826001 - 34826284
Alignment:
| Q |
33 |
atattcttgttatctattatacnnnnnnnaatatactcatgtgcaatgagagtatctaatgcttcttatggtataaaacccattctcaatggtaatttgc |
132 |
Q |
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| T |
34826001 |
atattcttgttatctattatactttttttaatatactcatgtgcaatgagagtatctaatgcttcttatggtataaaacccattctcaatagtaatttgc |
34826100 |
T |
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| Q |
133 |
ctaaagattataagattaagtaagtaattttcaaactatttatatgagaa-tgcttatttaatatggatggattttaaaataatcatttactctaatatt |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34826101 |
ctaaagattataagattaagtaagtaattttcaaactatttatatgagaaatgcttatttaatatggatggattttaaagtaatcatttactctaatatt |
34826200 |
T |
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| Q |
232 |
ttttaagatcttttttataacagacaaatatatcaataaaaatttatgtatttaatttatattgaaaattattctatcaaatac |
315 |
Q |
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| T |
34826201 |
ttttatggtcttttttataacagacaaatatatcaataaaaatttatgtatttaatttatattgaaaattattttatcaaatac |
34826284 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 294
Target Start/End: Complemental strand, 41004272 - 41004216
Alignment:
| Q |
238 |
gatcttttttataacagacaaatatatcaataaaaatttatgtatttaatttatatt |
294 |
Q |
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|||| |||||||| |||||||||| | ||||||||||||||||| | ||||||||| |
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| T |
41004272 |
gatcctttttatacgagacaaatatgtaaataaaaatttatgtatgtgatttatatt |
41004216 |
T |
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