View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0288_low_14 (Length: 306)
Name: NF0288_low_14
Description: NF0288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0288_low_14 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 29 - 306
Target Start/End: Original strand, 49274138 - 49274415
Alignment:
| Q |
29 |
aatcaaagggtcttggccgagtaaactcgatagcttccccaagtagagccacaatgcttagcaccataggatatgtataaaataaaaagaattaatttca |
128 |
Q |
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| T |
49274138 |
aatcaaagggtcttggccgagtaaactcgatagcttccccaagtagagccacaatgcttagcaccataggatatgtataaaataaaaagaattaatttca |
49274237 |
T |
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| Q |
129 |
ttatgatttgatgtaaataatgagtaaacaatctattggtcccttaatgtgagaggtggtgtcattatggtccttaaatgtattgaaacttcaaaacatc |
228 |
Q |
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| T |
49274238 |
ttatgatttgatgcaaataatgagtaaacaacctattggtcccttaatgtgagagatggtgtcattatgatccttaaatgtattgaaacttcaaaacatc |
49274337 |
T |
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| Q |
229 |
tatgaatgtgttttctgtttgtaatcttgtggagaactgataaacatagtacacattcatgattaaactaactagcaa |
306 |
Q |
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| T |
49274338 |
tgcgaatgtgttttctgtttgtaatcttgtggagaactgataaacatagtacacattcatgattaaactaactagcaa |
49274415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 49255495 - 49255441
Alignment:
| Q |
29 |
aatcaaagggtcttggccgagtaaactcgatagcttccccaagtagagccacaat |
83 |
Q |
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| T |
49255495 |
aatcaaagggtcttggccaagtaaactcagtaacttccccaagttgagccacaat |
49255441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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