View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0288_low_15 (Length: 277)

Name: NF0288_low_15
Description: NF0288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0288_low_15
NF0288_low_15
[»] chr8 (9 HSPs)
chr8 (1-248)||(2437172-2437419)
chr8 (58-244)||(2011069-2011254)
chr8 (58-244)||(1965440-1965626)
chr8 (137-269)||(1969357-1969489)
chr8 (137-264)||(2004152-2004279)
chr8 (142-240)||(2007537-2007635)
chr8 (152-244)||(1963770-1963862)
chr8 (143-243)||(2017941-2018041)
chr8 (182-219)||(23269096-23269133)
[»] chr1 (2 HSPs)
chr1 (112-244)||(5902946-5903078)
chr1 (107-255)||(5906419-5906567)
[»] chr4 (1 HSPs)
chr4 (148-219)||(5890603-5890674)


Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 2437419 - 2437172
Alignment:
Q  1 agtcttataagcatgcttcataatatgagcttaatacggcaaattataacgattatcttattccaatgaagaaacagaaaaactagaatggttataaagc 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2437419 agtcttataagcatgcttcataatatgagcttaatacggaaaattataacgattatcttattccaatgaagaaacagaaaaactagaatggttataaagc 2437320  T
Q  101 aaaaatcttatcaaaatcattccttaaaacttgttctcctgcaccaaatttctccacttgagtgttaattgagaaatagtctttgtagaagaaccatctt 200  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2437319 aaaaatcttatcaaaatcattccttaaaacttgttttcctgcaccaagcttctccacttgagtgttaattgagaaatagtctttgtcgaagaaccatctt 2437220  T
Q  201 ctttgagtgcattagaagcagcttcttttagttctttcatattactcc 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2437219 ctttgagtgcattagaagcagcttcttttagttctttcatattactcc 2437172  T

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Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 58 - 244
Target Start/End: Original strand, 2011069 - 2011254
Alignment:
Q  58 ttattccaatgaagaaacagaaaaactagaatggttataaagcaaaaatcttatcaaaatcattccttaaaacttgttctcctgcaccaaatttctccac 157  Q
    ||||||||||||| ||||||||  |||| |||||||| |||  |||||| ||| |||||  |||||||||| || ||| | |||||||||||||||||||    
T  2011069 ttattccaatgaa-aaacagaatgactataatggttaaaaaagaaaaatattagcaaaagaattccttaaatctggtttttctgcaccaaatttctccac 2011167  T
Q  158 ttgagtgttaattgagaaatagtctttgtagaagaaccatcttctttgagtgcattagaagcagcttcttttagttctttcatatta 244  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||| |||||||||    
T  2011168 ttgagtgttaattgagaaatagtctttgtagaagatccatcttctttgagtgcattagaagcaacttcttttaattccttcatatta 2011254  T

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Target: chr8; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 58 - 244
Target Start/End: Complemental strand, 1965626 - 1965440
Alignment:
Q  58 ttattccaatgaagaaacagaaaaactagaatggttataaagcaaaaatcttatcaaaatcattccttaaaacttgttctcctgcaccaaatttctccac 157  Q
    ||||||||||||| ||||||||  |||| |||||||| |||  |||||| ||| ||||| ||||| ||||| || ||| |||||||||||||||||||||    
T  1965626 ttattccaatgaaaaaacagaatgactataatggttaaaaaagaaaaatattagcaaaagcattcgttaaatctagttttcctgcaccaaatttctccac 1965527  T
Q  158 ttgagtgttaattgagaaatagtctttgtagaagaaccatcttctttgagtgcattagaagcagcttcttttagttctttcatatta 244  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||| || ||||||  || |||||||||    
T  1965526 ttgagtgttaattgagatatagtctttgtagaagatccatcttctttgagtgcattggaagcaactccttttaactccttcatatta 1965440  T

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Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 137 - 269
Target Start/End: Complemental strand, 1969489 - 1969357
Alignment:
Q  137 tcctgcaccaaatttctccacttgagtgttaattgagaaatagtctttgtagaagaaccatcttctttgagtgcattagaagcagcttcttttagttctt 236  Q
    |||| ||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||| ||| |    
T  1969489 tcctacaccaaatttctccacttgagtgctatttgagaaatagtttttgtagaagaaccatcttctttgattgcatttgaagcagcttcttttaattcct 1969390  T
Q  237 tcatattactccgcaatttttcgccttcatctc 269  Q
    |||| ||| | ||||| || || ||||| ||||    
T  1969389 tcatgttattgcgcaacttctcaccttcttctc 1969357  T

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Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 137 - 264
Target Start/End: Original strand, 2004152 - 2004279
Alignment:
Q  137 tcctgcaccaaatttctccacttgagtgttaattgagaaatagtctttgtagaagaaccatcttctttgagtgcattagaagcagcttcttttagttctt 236  Q
    |||| ||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||  ||||| ||||||| |||||||| ||| |    
T  2004152 tcctacactaaatttctccacttgagtgctaattgagaaatagtgtttgtagaagaaccatcttctttgacagcattcgaagcagattcttttaattcct 2004251  T
Q  237 tcatattactccgcaatttttcgccttc 264  Q
    |||| ||| | |||||||| || |||||    
T  2004252 tcatgttattgcgcaatttctcaccttc 2004279  T

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Target: chr8; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 2007537 - 2007635
Alignment:
Q  142 caccaaatttctccacttgagtgttaattgagaaatagtctttgtagaagaaccatcttctttgagtgcattagaagcagcttcttttagttctttcat 240  Q
    |||||||||||||||||| |||| || |||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||| ||| |||||    
T  2007537 caccaaatttctccacttaagtgctatttgagaaatagtttttgtagaagaaccatcttctttgactgcatttgaagcagcttcttttaattccttcat 2007635  T

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Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 244
Target Start/End: Complemental strand, 1963862 - 1963770
Alignment:
Q  152 ctccacttgagtgttaattgagaaatagtctttgtagaagaaccatcttctttgagtgcattagaagcagcttcttttagttctttcatatta 244  Q
    ||||||||||||| ||||||||||| ||||||||||| |||||||||||||||  || || ||  |||||||||||| | ||| |||||||||    
T  1963862 ctccacttgagtgctaattgagaaagagtctttgtagtagaaccatcttctttatgtacactactagcagcttctttaaattccttcatatta 1963770  T

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Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 243
Target Start/End: Original strand, 2017941 - 2018041
Alignment:
Q  143 accaaatttctccacttgagtgttaattgagaaatagtctttgtagaagaaccatcttctttgagtgcattagaagcagcttcttttagttctttcatat 242  Q
    |||||||||||||||||||||| |||||||||||  ||||||||| |||| ||||| |||||  ||||| ||  ||||| |||||||| ||| |||||||    
T  2017941 accaaatttctccacttgagtgctaattgagaaagtgtctttgtaaaagatccatcatctttatgtgcactattagcagattcttttaattccttcatat 2018040  T
Q  243 t 243  Q
    |    
T  2018041 t 2018041  T

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Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 23269133 - 23269096
Alignment:
Q  182 tttgtagaagaaccatcttctttgagtgcattagaagc 219  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23269133 tttgtagaagaaccatcttctttgagtgcattagaagc 23269096  T

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Target: chr1 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 112 - 244
Target Start/End: Complemental strand, 5903078 - 5902946
Alignment:
Q  112 caaaatcattccttaaaacttgttctcctgcaccaaatttctccacttgagtgttaattgagaaatagtctttgtagaagaaccatcttctttgagtgca 211  Q
    ||||||||||||||||| || ||| || ||||||||||||||||||||||||| |||||||||||| |||||| ||||||| || ||||||||||| |||    
T  5903078 caaaatcattccttaaagctagttttcatgcaccaaatttctccacttgagtgctaattgagaaatggtctttctagaagacccgtcttctttgagcgca 5902979  T
Q  212 ttagaagcagcttcttttagttctttcatatta 244  Q
    |||| || ||||||||||| ||| |||||||||    
T  5902978 ttagtagaagcttcttttaattccttcatatta 5902946  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 107 - 255
Target Start/End: Complemental strand, 5906567 - 5906419
Alignment:
Q  107 cttatcaaaatcattccttaaaacttgttctcctgcaccaaatttctccacttgagtgttaattgagaaatagtctttgtagaagaaccatcttctttga 206  Q
    |||| ||||||||||||||||| || ||| || |||||||||||| |||||||| ||| ||||||||||| ||||||| ||||||| ||||||||||  |    
T  5906567 cttaacaaaatcattccttaaagctagttttcatgcaccaaatttttccacttgtgtgctaattgagaaacagtctttctagaagacccatcttcttgaa 5906468  T
Q  207 gtgcattagaagcagcttcttttagttctttcatattactccgcaattt 255  Q
    ||||||||| ||| |||||||| | ||| ||||||||| | ||||||||    
T  5906467 gtgcattagtagctgcttctttcaattccttcatattattgcgcaattt 5906419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 5890603 - 5890674
Alignment:
Q  148 atttctccacttgagtgttaattgagaaatagtctttgtagaagaaccatcttctttgagtgcattagaagc 219  Q
    ||||||||||||||||| ||||||||||| | | ||||||||||||||||||||||||||||||||||||||    
T  5890603 atttctccacttgagtgctaattgagaaaaaatgtttgtagaagaaccatcttctttgagtgcattagaagc 5890674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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