View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0288_low_17 (Length: 272)

Name: NF0288_low_17
Description: NF0288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0288_low_17
NF0288_low_17
[»] chr1 (2 HSPs)
chr1 (9-268)||(4777107-4777366)
chr1 (16-74)||(4784645-4784703)


Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 9 - 268
Target Start/End: Original strand, 4777107 - 4777366
Alignment:
Q  9 agcagagagctatggattttgggtgcaaggacgttaatgtttggaaagaagcactttcaacttacacatctcaagtacaatcactttctctctccaaaaa 108  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4777107 agcagaaagctatggattttgggtgcaaggacgttaatgtttggaaagaagcactttcaacttacacatctcaagtgcaatcactttctctctccaaaaa 4777206  T
Q  109 caaacccaatttagtttctcttaaccaattttattgcaatgaactaccttccctcattcaccaacgaaaccctaacccttttatcactacccaagaactc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4777207 caaacccaatttagtttctcttaaccaattttattgcaatgaactaccttccctcattcaccaacgaaaccctaacccttttatcactacccaagaactc 4777306  T
Q  209 tccaaactcatgcaatggaaactcacacgtggcaaatggaggttaatcactcactcactc 268  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4777307 tccaaactcatgcaatggaaactcacacgtggcaaatggaggttgatcactcactcactc 4777366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 4784645 - 4784703
Alignment:
Q  16 agctatggattttgggtgcaaggacgttaatgtttggaaagaagcactttcaacttaca 74  Q
    ||||||||||||||| | |||||||||||  |||||||| ||||| |||||||||||||    
T  4784645 agctatggattttggattcaaggacgttagcgtttggaaggaagcgctttcaacttaca 4784703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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