View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0288_low_2 (Length: 657)
Name: NF0288_low_2
Description: NF0288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0288_low_2 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 30 - 533
Target Start/End: Original strand, 42215861 - 42216362
Alignment:
| Q |
30 |
atcctcagaacgaattgtctcattatatgccacactaaaagccatacctcttaatttcagacatttatgtctgatgtcttcaagtttccaaaactggttc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42215861 |
atcctcagaacgaattgtctcattatatgccacactaaaagccata--tcttaatttcagacacttatgtctgatgtcttcaagtttccaaaactggttc |
42215958 |
T |
|
| Q |
130 |
cattcataaacttgttaggtatctctttgggatattttcctctcagtccattcctctctttggtgatatcgcattcgtgtgtgtagcaagaaaatattgt |
229 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42215959 |
cattcataaacttgttagatatctctttgggatattttcctctcagtccattcctctctttggtgatatcgcattcgtgtgtgtagcaagaaaatattgt |
42216058 |
T |
|
| Q |
230 |
cgcgctatttagcannnnnnnnnnnnaataaggcgttaacaaaccaaaatacataatccaaactaattttctctgcaaatagtcagatctaaagaaaaaa |
329 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42216059 |
cgcgctatttagcatttttcttttttaataaggcgttaacaaaccaaaatacataatccaaactaattttctctgcaaatagtcagatctaaagaaaaaa |
42216158 |
T |
|
| Q |
330 |
taactagatgtttgcttgcatccgctatatgtgatctctaaaatgttgacaagttcgcttataccaccttgaatttgtgaatgaaaattaaactccacaa |
429 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42216159 |
taactagatgtttgcttgcatccgatatatgtgatctctaaaatgttgacaagttcgcttataccaccttgaatttgtgaatgaaaattaaactccacaa |
42216258 |
T |
|
| Q |
430 |
aaatatctaacaacctctctggaggatgatttgtaagtaatcttggagccttgacagatgtcctcgtcactagcgtaatggtgagtccaggacctaacct |
529 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
42216259 |
aaatatctaacaacctctctggaggatgatttgtaagtaatcttggagccttgagagatgtcctcgtcactagcgtgatggtgagtccagaacctaacct |
42216358 |
T |
|
| Q |
530 |
atcc |
533 |
Q |
| |
|
|||| |
|
|
| T |
42216359 |
atcc |
42216362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 30 - 582
Target Start/End: Original strand, 42198125 - 42198674
Alignment:
| Q |
30 |
atcctcagaacgaattgtctcattatatgccacactaaaagccatacctcttaatttcagacatttatgtctgatgtcttcaagtttccaaaactggttc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42198125 |
atcctcagaacgaattgtctcattatatgccacactaaaagccata--tcttaatttcagacacttatgtctgatgtcttcaagtttccaaaactggttc |
42198222 |
T |
|
| Q |
130 |
cattcataaacttgttaggtatctctttgggatattttcctctcagtccattcctctctttggtgatatcgcattcgtgtgtgtagcaagaaaatattgt |
229 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42198223 |
cattcataaacttgttagatatctctttgggatattttcctctcagtccattcctctctttggtgatatcgcattcgtgtgtgtagcaagaaaatattgt |
42198322 |
T |
|
| Q |
230 |
cgcgctatttagcannnnnnnnnnnnaataaggcgttaacaaaccaaaatacataatccaaactaattttctctgcaaatagtcagatctaaagaaaaaa |
329 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42198323 |
cgcgctatttagcatttttcttttttaataaggcgttaacaaaccaaaatacataatccaaactaattttctctgcaaatagtcagatctaaagaaaaaa |
42198422 |
T |
|
| Q |
330 |
taactagatgtttgcttgcatccgctatatgtgatctctaaaatgttgacaagttcgcttataccaccttgaatttgtgaatgaaaattaaactccacaa |
429 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42198423 |
taactagatgtttgcttgcatccgatatatgtgatctctaaaatgttgacaagttcgcttataccaccttgaatttgtgaatgaaaattaaactccacaa |
42198522 |
T |
|
| Q |
430 |
aaatatctaacaacctctctggaggatgatttgtaagtaatcttggagccttgacagatgtcctcgtcactagcgtaatggtgagtccaggacctaacct |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||| |||||||||||||| |
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| T |
42198523 |
aaatatctaacaacctctctggaggatgatttgtaagtaatcttggagccttgagagatgtcctcgtcactagcgtgatg-tgagcccaggacctaacct |
42198621 |
T |
|
| Q |
530 |
atccnnnnnnnnnnnnnnntcatacgaaaaaagttgtttcaatcatgttcatc |
582 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
42198622 |
atccaaaaaaaaaaaaaaatcatatgaaaaaagttgtttcaatcatgttcatc |
42198674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 30 - 582
Target Start/End: Original strand, 42206993 - 42207542
Alignment:
| Q |
30 |
atcctcagaacgaattgtctcattatatgccacactaaaagccatacctcttaatttcagacatttatgtctgatgtcttcaagtttccaaaactggttc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
42206993 |
atcctcagaacgaattgtctcattatatgccacactaaaagccata--tcttaatttcagacacttatgtctgatgtcttcaagtttccaaaactggttc |
42207090 |
T |
|
| Q |
130 |
cattcataaacttgttaggtatctctttgggatattttcctctcagtccattcctctctttggtgatatcgcattcgtgtgtgtagcaagaaaatattgt |
229 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42207091 |
cattcataaacttgttagatatctctttgggatattttcctctcagtccattcctctctttggtgatatcgcattcgtgtgtgtagcaagaaaatattgt |
42207190 |
T |
|
| Q |
230 |
cgcgctatttagcannnnnnnnnnnnaataaggcgttaacaaaccaaaatacataatccaaactaattttctctgcaaatagtcagatctaaagaaaaaa |
329 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42207191 |
cgcgctatttagcatttttcttttttaataaggcgttaacaaaccaaaatacataatccaaactaattttctctgcaaatagtcagatctaaagaaaaaa |
42207290 |
T |
|
| Q |
330 |
taactagatgtttgcttgcatccgctatatgtgatctctaaaatgttgacaagttcgcttataccaccttgaatttgtgaatgaaaattaaactccacaa |
429 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42207291 |
taactagatgtttgcttgcatccgatatatgtgatctctaaaatgttgacaagttcgcttataccaccttgaatttgtgaatgaaaattaaactccacaa |
42207390 |
T |
|
| Q |
430 |
aaatatctaacaacctctctggaggatgatttgtaagtaatcttggagccttgacagatgtcctcgtcactagcgtaatggtgagtccaggacctaacct |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||| |||||||||||||| |
|
|
| T |
42207391 |
aaatatctaacaacctctctggaggatgatttgtaagtaatcttggagccttgagagatgtcctcgtcactagcgtgatg-tgagcccaggacctaacct |
42207489 |
T |
|
| Q |
530 |
atccnnnnnnnnnnnnnnntcatacgaaaaaagttgtttcaatcatgttcatc |
582 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
42207490 |
atccaaaaaaaaaaaaaaatcatatgaaaaaagttgtttcaatcatgttcatc |
42207542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 549 - 582
Target Start/End: Original strand, 42216374 - 42216407
Alignment:
| Q |
549 |
tcatacgaaaaaagttgtttcaatcatgttcatc |
582 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
42216374 |
tcatacgaaaaaagttgtttcaatcatgttcatc |
42216407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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